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Remove task.cpus from the command (#1559)

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Jose Espinosa-Carrasco 2022-04-22 16:29:49 +02:00 committed by GitHub
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commit b3e56c83c6
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modules/phantompeakqualtools/main.nf
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@ -26,7 +26,7 @@ process PHANTOMPEAKQUALTOOLS {
def prefix = task.ext.prefix ?: "${meta.id}"
"""
RUN_SPP=`which run_spp.R`
Rscript $args -e "library(caTools); source(\\"\$RUN_SPP\\")" -c="$bam" -savp="${prefix}.spp.pdf" -savd="${prefix}.spp.Rdata" -out="${prefix}.spp.out" -p=$task.cpus
Rscript $args -e "library(caTools); source(\\"\$RUN_SPP\\")" -c="$bam" -savp="${prefix}.spp.pdf" -savd="${prefix}.spp.Rdata" -out="${prefix}.spp.out"
cat <<-END_VERSIONS > versions.yml
"${task.process}":