From b50f4e3d59810447c10520c8dc9026c96d7c6470 Mon Sep 17 00:00:00 2001 From: Michael L Heuer Date: Tue, 16 Nov 2021 05:37:27 -0600 Subject: [PATCH] Update dsh-bio to 2.0.6. (#1075) Co-authored-by: Harshil Patel --- modules/dshbio/exportsegments/main.nf | 6 +++--- modules/dshbio/filterbed/main.nf | 6 +++--- modules/dshbio/filtergff3/main.nf | 6 +++--- modules/dshbio/splitbed/main.nf | 6 +++--- modules/dshbio/splitgff3/main.nf | 6 +++--- 5 files changed, 15 insertions(+), 15 deletions(-) diff --git a/modules/dshbio/exportsegments/main.nf b/modules/dshbio/exportsegments/main.nf index 84f59e89..ec471000 100644 --- a/modules/dshbio/exportsegments/main.nf +++ b/modules/dshbio/exportsegments/main.nf @@ -11,11 +11,11 @@ process DSHBIO_EXPORTSEGMENTS { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0" } input: diff --git a/modules/dshbio/filterbed/main.nf b/modules/dshbio/filterbed/main.nf index 35039f21..9ad8ce8b 100644 --- a/modules/dshbio/filterbed/main.nf +++ b/modules/dshbio/filterbed/main.nf @@ -11,11 +11,11 @@ process DSHBIO_FILTERBED { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0" } input: diff --git a/modules/dshbio/filtergff3/main.nf b/modules/dshbio/filtergff3/main.nf index bf677da8..bf729dbf 100644 --- a/modules/dshbio/filtergff3/main.nf +++ b/modules/dshbio/filtergff3/main.nf @@ -11,11 +11,11 @@ process DSHBIO_FILTERGFF3 { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0" } input: diff --git a/modules/dshbio/splitbed/main.nf b/modules/dshbio/splitbed/main.nf index 3e8d656c..20e679f4 100644 --- a/modules/dshbio/splitbed/main.nf +++ b/modules/dshbio/splitbed/main.nf @@ -11,11 +11,11 @@ process DSHBIO_SPLITBED { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0" } input: diff --git a/modules/dshbio/splitgff3/main.nf b/modules/dshbio/splitgff3/main.nf index dd477181..e0312a19 100644 --- a/modules/dshbio/splitgff3/main.nf +++ b/modules/dshbio/splitgff3/main.nf @@ -11,11 +11,11 @@ process DSHBIO_SPLITGFF3 { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? "bioconda::dsh-bio=2.0.5" : null) + conda (params.enable_conda ? "bioconda::dsh-bio=2.0.6" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.5--hdfd78af_0" + container "https://depot.galaxyproject.org/singularity/dsh-bio:2.0.6--hdfd78af_0" } else { - container "quay.io/biocontainers/dsh-bio:2.0.5--hdfd78af_0" + container "quay.io/biocontainers/dsh-bio:2.0.6--hdfd78af_0" } input: