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Bugfix for CellRanger Dockerfile (#1812)

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Bugfix to enable Singularity support
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Alexander Peltzer 2022-06-27 11:07:33 +02:00 committed by GitHub
parent 233fa70811
commit b573ff053e
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modules/cellranger/mkfastq/Dockerfile
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@ -28,7 +28,7 @@ RUN \
mv *.rpm bcl2fastq2-$BCL2FASTQ2_VER.rpm && \ mv *.rpm bcl2fastq2-$BCL2FASTQ2_VER.rpm && \
rpm2cpio ./bcl2fastq2-$BCL2FASTQ2_VER.rpm | cpio -idmv && \ rpm2cpio ./bcl2fastq2-$BCL2FASTQ2_VER.rpm | cpio -idmv && \
export PATH=/tmp/usr/local/bin/:$PATH && \ export PATH=/tmp/usr/local/bin/:$PATH && \
ln -s /tmp/usr/local/bin/bcl2fastq /usr/bin/bcl2fastq && \ mv /tmp/usr/local/bin/bcl2fastq /usr/bin/bcl2fastq && \
rm -rf bcl2fastq2-$BCL2FASTQ2_VER.* rm -rf bcl2fastq2-$BCL2FASTQ2_VER.*
# Install cellranger # Install cellranger