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Update test script

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This commit is contained in:
drpatelh 2021-02-23 20:43:05 +00:00
parent aaaef7df8c
commit b581bdc36c
1 changed files with 5 additions and 4 deletions
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9
tests/software/ivar/trim/main.nf
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@ -5,11 +5,12 @@ nextflow.enable.dsl = 2
include { IVAR_TRIM } from '../../../../software/ivar/trim/main.nf' addParams([:])
workflow test_ivar_trim {
bed_file = file("${launchDir}/tests/data/bed/test-sc2-artic-v3.bed", checkIfExists: true)
def bed = file("${launchDir}/tests/data/bed/test-sc2-artic-v3.bed", checkIfExists: true)
def input = []
input = [ [ id:'test'],
file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam", checkIfExists: true) ]
input = [ [ id:'test'],
file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam", checkIfExists: true),
file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam.bai", checkIfExists: true) ]
IVAR_TRIM ( input, bed_file )
IVAR_TRIM ( input, bed )
}