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Fix for nested directories in tar archive (#2062)
* Fix for nested directories in tar archive * fix untar for tar with a single directory * prettier
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2 changed files with 2 additions and 2 deletions
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@ -27,7 +27,7 @@ process UNTAR {
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## Ensures --strip-components only applied when top level of tar contents is a directory
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## If just files or multiple directories, place all in output
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if [[ \$(tar -tzf ${archive} | grep "/\$" | wc -l) -eq 1 ]]; then
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if [[ \$(tar -tzf ${archive} | grep -o -P "^.*?\\/" | uniq | wc -l) -eq 1 ]]; then
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tar \\
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-C output --strip-components 1 \\
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-xzvf \\
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@ -15,7 +15,7 @@
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tags:
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- untar
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files:
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- path: output/untar/flowcell/220422_M11111_0222_000000000-K9H97/RunInfo.xml
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- path: output/untar/flowcell/RunInfo.xml
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md5sum: 03038959f4dd181c86bc97ae71fe270a
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- name: untar test_untar_onlyfiles
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