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added test file for phantompeakqualtools for testing

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Sruthi Suresh 2020-12-17 14:49:35 -06:00 committed by Edmund Miller
parent c98f9284a2
commit b7435b0159
2 changed files with 20 additions and 0 deletions
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12
tests/software/phantompeakqualtools/main.nf Normal file
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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { PHANTOMPEAKQUALTOOLS } from '../../../software/phantompeakqualtools/main.nf' addParams(options: [publish_dir: 'test_phantompeakqualtools'])
workflow test_phantompeakqualtools {
def input = []
input = [ [ id:'test', single_end:true ], // meta map
[ file("${launchDir}/tests/data/bam/test/test.single_end.sorted.bam", checkIfExists: true) ] ]
PHANTOMPEAKQUALTOOLS ( input )
}

8
tests/software/phantompeakqualtools/test.yml Normal file
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- name: Run phantompeakqualtools test workflow
command: nextflow run ./tests/software/phantompeakqualtools/ -profile docker -entry test_phantompeakqualtools -c tests/config/nextflow.config
tags:
- phantompeakqualtools
files:
- path: output/phantompeakqualtools/test.single_end.sorted.bam.out
- path: output/phantompeakqualtools/test.single_end.sorted.bam.pdf
- path: output/phantompeakqualtools/test.single_end.sorted.bam.Rdata