Fix for Maxbin2 emitting input files (#1376)

* fix: remove left-over unnecessary code * Fix accidently emitting input * Fix tests
2 years ago · b78a4a4567
parent de0d57a562
commit b78a4a4567
1 changed files with 2 additions and 1 deletions
--- a/modules/maxbin2/main.nf
+++ b/modules/maxbin2/main.nf
@ -29,8 +29,9 @@ process MAXBIN2 {
    def prefix = task.ext.prefix ?: "${meta.id}"
    def associate_files = reads ? "-reads $reads" : "-abund $abund"
    """
+    mkdir input/ && mv $contigs input/
    run_MaxBin.pl \\
-        -contig $contigs \\
+        -contig input/$contigs \\
        $associate_files \\
        -thread $task.cpus \\
        $args \\