From b96f2d6a5e9a23387afc0e40d7ea68ef128d360b Mon Sep 17 00:00:00 2001 From: Edmund Miller Date: Tue, 24 Nov 2020 14:20:42 -0600 Subject: [PATCH] test(config): One config to rule them all Co-authored-by: Harshil Patel --- tests/{fastqc => config}/nextflow.config | 1 + tests/fastqc/test_fastqc.yml | 4 ++-- 2 files changed, 3 insertions(+), 2 deletions(-) rename tests/{fastqc => config}/nextflow.config (99%) diff --git a/tests/fastqc/nextflow.config b/tests/config/nextflow.config similarity index 99% rename from tests/fastqc/nextflow.config rename to tests/config/nextflow.config index 01af7cef..4149feea 100644 --- a/tests/fastqc/nextflow.config +++ b/tests/config/nextflow.config @@ -1,3 +1,4 @@ + params { outdir = "output/" publish_dir_mode = "copy" diff --git a/tests/fastqc/test_fastqc.yml b/tests/fastqc/test_fastqc.yml index 25d67ab4..b74cb983 100644 --- a/tests/fastqc/test_fastqc.yml +++ b/tests/fastqc/test_fastqc.yml @@ -1,5 +1,5 @@ - name: Run fastqc single-end test workflow - command: nextflow run ./tests/fastqc/ -profile docker -entry test_single_end + command: nextflow run ./tests/fastqc/ -profile docker -entry test_single_end -c tests/config/nextflow.config tags: - fastqc files: @@ -8,7 +8,7 @@ - path: output/test_single_end/test_fastqc.zip - name: Run fastqc paired-end test workflow - command: nextflow run ./tests/fastqc/ -profile docker -entry test_paired_end + command: nextflow run ./tests/fastqc/ -profile docker -entry test_paired_end -c tests/config/nextflow.config tags: - fastqc files: