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Bump bcl-convert version (#2077)

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* Update main.nf

* update test.yml

* prettier
This commit is contained in:
Matthias De Smet 2022-09-16 14:34:52 +02:00 committed by GitHub
parent 54ff289487
commit b98f1b77d1
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2 changed files with 9 additions and 3 deletions
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2
modules/bclconvert/main.nf
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@ -5,7 +5,7 @@ process BCLCONVERT {
if (params.enable_conda) { if (params.enable_conda) {
exit 1, "Conda environments cannot be used when using bcl-convert. Please use docker or singularity containers." exit 1, "Conda environments cannot be used when using bcl-convert. Please use docker or singularity containers."
} }
container "nfcore/bclconvert:3.10.5" container "nfcore/bclconvert:4.0.3"
input: input:
tuple val(meta), path(samplesheet), path(run_dir) tuple val(meta), path(samplesheet), path(run_dir)

10
tests/modules/bclconvert/test.yml
View file

@ -7,16 +7,22 @@
- path: output/bclconvert/Logs/FastqComplete.txt - path: output/bclconvert/Logs/FastqComplete.txt
- path: output/bclconvert/Logs/Info.log - path: output/bclconvert/Logs/Info.log
- path: output/bclconvert/Logs/Warnings.log - path: output/bclconvert/Logs/Warnings.log
- path: output/bclconvert/Reports/Adapter_Cycle_Metrics.csv
md5sum: 5a0c88793b4a0885fe3dda16609b576e
- path: output/bclconvert/Reports/Adapter_Metrics.csv - path: output/bclconvert/Reports/Adapter_Metrics.csv
md5sum: 989240b8840b2169ac1061f952c90f6c md5sum: 989240b8840b2169ac1061f952c90f6c
- path: output/bclconvert/Reports/Demultiplex_Stats.csv - path: output/bclconvert/Reports/Demultiplex_Stats.csv
md5sum: 93949a8cd96f907d83e0808c1ec2a04b md5sum: 93949a8cd96f907d83e0808c1ec2a04b
- path: output/bclconvert/Reports/Demultiplex_Tile_Stats.csv
md5sum: 83120160b0f22a1303fa1db31c19f6e9
- path: output/bclconvert/Reports/IndexMetricsOut.bin - path: output/bclconvert/Reports/IndexMetricsOut.bin
md5sum: 9e688c58a5487b8eaf69c9e1005ad0bf md5sum: 9e688c58a5487b8eaf69c9e1005ad0bf
- path: output/bclconvert/Reports/Index_Hopping_Counts.csv - path: output/bclconvert/Reports/Index_Hopping_Counts.csv
md5sum: 1059369e375fd8f8423c0f6c934be978 md5sum: 1059369e375fd8f8423c0f6c934be978
- path: output/bclconvert/Reports/Quality_Metrics.csv - path: output/bclconvert/Reports/Quality_Metrics.csv
md5sum: 6614accb1bb414fe312b17b81f5521f7 md5sum: 6614accb1bb414fe312b17b81f5521f7
- path: output/bclconvert/Reports/Quality_Tile_Metrics.csv
md5sum: cdc89fd2962bdd4a24f71e186112118a
- path: output/bclconvert/Reports/RunInfo.xml - path: output/bclconvert/Reports/RunInfo.xml
md5sum: 03038959f4dd181c86bc97ae71fe270a md5sum: 03038959f4dd181c86bc97ae71fe270a
- path: output/bclconvert/Reports/SampleSheet.csv - path: output/bclconvert/Reports/SampleSheet.csv
@ -26,9 +32,9 @@
- path: output/bclconvert/Reports/fastq_list.csv - path: output/bclconvert/Reports/fastq_list.csv
md5sum: 05bc84f51840f5754cfb8381b36f2cb0 md5sum: 05bc84f51840f5754cfb8381b36f2cb0
- path: output/bclconvert/Sample1_S1_L001_R1_001.fastq.gz - path: output/bclconvert/Sample1_S1_L001_R1_001.fastq.gz
md5sum: 57d2f3b389656245f923351d3e3d2d65 md5sum: 0a0341e2990b4fa1d9ad4b4c603144c1
- path: output/bclconvert/Undetermined_S0_L001_R1_001.fastq.gz - path: output/bclconvert/Undetermined_S0_L001_R1_001.fastq.gz
md5sum: a4745abc5e7fdb89cc6df3069f3c6e69 md5sum: febef808ae5397ea4ee7ee40e5fd39e0
- path: output/bclconvert/flowcell/InterOp/ControlMetricsOut.bin - path: output/bclconvert/flowcell/InterOp/ControlMetricsOut.bin
md5sum: 6d77b38d0793a6e1ce1e85706e488953 md5sum: 6d77b38d0793a6e1ce1e85706e488953
- path: output/bclconvert/flowcell/InterOp/CorrectedIntMetricsOut.bin - path: output/bclconvert/flowcell/InterOp/CorrectedIntMetricsOut.bin