millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-10 20:23:10 +00:00
Code Issues Releases Packages Activity

Included args option in picard AddOrReplaceReadGroups (#1973)

Browse source 
feat included args option in picard addorreplacereadgroups
This commit is contained in:
Lucpen 2022-08-25 12:06:02 +02:00 committed by GitHub
parent 98642619bd
commit baa2845d28
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 2 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
modules/picard/addorreplacereadgroups/main.nf
View file

@ -34,8 +34,9 @@ process PICARD_ADDORREPLACEREADGROUPS {
} }
""" """
picard \\ picard \\
AddOrReplaceReadGroups \\
-Xmx${avail_mem}g \\ -Xmx${avail_mem}g \\
AddOrReplaceReadGroups \\
$args \\
--INPUT ${bam} \\ --INPUT ${bam} \\
--OUTPUT ${prefix}.bam \\ --OUTPUT ${prefix}.bam \\
--RGID ${ID} \\ --RGID ${ID} \\