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Included args option in picard AddOrReplaceReadGroups (#1973)

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feat included args option in picard addorreplacereadgroups
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Lucpen 2022-08-25 12:06:02 +02:00 committed by GitHub
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commit baa2845d28
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modules/picard/addorreplacereadgroups/main.nf
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@ -34,8 +34,9 @@ process PICARD_ADDORREPLACEREADGROUPS {
} }
""" """
picard \\ picard \\
AddOrReplaceReadGroups \\
-Xmx${avail_mem}g \\ -Xmx${avail_mem}g \\
AddOrReplaceReadGroups \\
$args \\
--INPUT ${bam} \\ --INPUT ${bam} \\
--OUTPUT ${prefix}.bam \\ --OUTPUT ${prefix}.bam \\
--RGID ${ID} \\ --RGID ${ID} \\