From bbdca4fa76e8888642c5d5ed5b6845d50c85cae1 Mon Sep 17 00:00:00 2001 From: Anders Goncalves da Silva Date: Fri, 12 Feb 2021 16:14:46 -0800 Subject: [PATCH] Fix output files --- software/ivar/trim/meta.yml | 12 ++---------- 1 file changed, 2 insertions(+), 10 deletions(-) diff --git a/software/ivar/trim/meta.yml b/software/ivar/trim/meta.yml index e574beed..f35627e9 100644 --- a/software/ivar/trim/meta.yml +++ b/software/ivar/trim/meta.yml @@ -51,18 +51,10 @@ output: description: | Groovy Map containing sample information e.g. [ id:'test', single_end:false ] - - fasta: + - bam: type: file - description: iVar generated consensus sequence + description: iVar generated trimmed bam file (unsorted) pattern: "*.fa" - - qual: - type: file - description: iVar generated quality file - pattern: "*.qual.txt" - - mpileup: - type: file - description: mpileup output from samtools mpileup [OPTIONAL] - pattern: "*.mpileup" - version: type: file description: File containing software version