diff --git a/tests/data/delete_me/kallistobustools/count/SRR8599150_S1_L001_R1_001.20k_lines.fastq.gz b/tests/data/delete_me/kallistobustools/count/SRR8599150_S1_L001_R1_001.20k_lines.fastq.gz deleted file mode 100644 index 0ea6a1c6..00000000 Binary files a/tests/data/delete_me/kallistobustools/count/SRR8599150_S1_L001_R1_001.20k_lines.fastq.gz and /dev/null differ diff --git a/tests/data/delete_me/kallistobustools/count/SRR8599150_S1_L001_R2_001.20k_lines.fastq.gz b/tests/data/delete_me/kallistobustools/count/SRR8599150_S1_L001_R2_001.20k_lines.fastq.gz deleted file mode 100644 index 8a03f067..00000000 Binary files a/tests/data/delete_me/kallistobustools/count/SRR8599150_S1_L001_R2_001.20k_lines.fastq.gz and /dev/null differ diff --git a/tests/data/delete_me/kallistobustools/count/kb_ref.idx b/tests/data/delete_me/kallistobustools/count/kb_ref.idx deleted file mode 100644 index 02eb067f..00000000 Binary files a/tests/data/delete_me/kallistobustools/count/kb_ref.idx and /dev/null differ diff --git a/tests/data/delete_me/kallistobustools/count/mismatch.idx b/tests/data/delete_me/kallistobustools/count/mismatch.idx deleted file mode 100644 index 61cdb679..00000000 Binary files a/tests/data/delete_me/kallistobustools/count/mismatch.idx and /dev/null differ diff --git a/tests/data/delete_me/kallistobustools/count/pbmc_1k_protein_v3_antibody_S2_L001_R1_001.100k_sub.fastq.gz b/tests/data/delete_me/kallistobustools/count/pbmc_1k_protein_v3_antibody_S2_L001_R1_001.100k_sub.fastq.gz deleted file mode 100644 index 30667959..00000000 Binary files a/tests/data/delete_me/kallistobustools/count/pbmc_1k_protein_v3_antibody_S2_L001_R1_001.100k_sub.fastq.gz and /dev/null differ diff --git a/tests/data/delete_me/kallistobustools/count/pbmc_1k_protein_v3_antibody_S2_L001_R2_001.100k_sub.fastq.gz b/tests/data/delete_me/kallistobustools/count/pbmc_1k_protein_v3_antibody_S2_L001_R2_001.100k_sub.fastq.gz deleted file mode 100644 index b5fe3c62..00000000 Binary files a/tests/data/delete_me/kallistobustools/count/pbmc_1k_protein_v3_antibody_S2_L001_R2_001.100k_sub.fastq.gz and /dev/null differ diff --git a/tests/data/delete_me/kallistobustools/count/t2g.kite.txt b/tests/data/delete_me/kallistobustools/count/t2g.kite.txt deleted file mode 100644 index c97354a4..00000000 --- a/tests/data/delete_me/kallistobustools/count/t2g.kite.txt +++ /dev/null @@ -1,782 +0,0 @@ -CD3 CD3 CD3 -CD3-0.1 CD3 CD3 -CD3-0.2 CD3 CD3 -CD3-0.3 CD3 CD3 -CD3-1.1 CD3 CD3 -CD3-1.2 CD3 CD3 -CD3-1.3 CD3 CD3 -CD3-2.1 CD3 CD3 -CD3-2.2 CD3 CD3 -CD3-2.3 CD3 CD3 -CD3-3.1 CD3 CD3 -CD3-3.2 CD3 CD3 -CD3-3.3 CD3 CD3 -CD3-4.1 CD3 CD3 -CD3-4.2 CD3 CD3 -CD3-4.3 CD3 CD3 -CD3-5.1 CD3 CD3 -CD3-5.2 CD3 CD3 -CD3-5.3 CD3 CD3 -CD3-6.1 CD3 CD3 -CD3-6.2 CD3 CD3 -CD3-6.3 CD3 CD3 -CD3-7.1 CD3 CD3 -CD3-7.2 CD3 CD3 -CD3-7.3 CD3 CD3 -CD3-8.1 CD3 CD3 -CD3-8.2 CD3 CD3 -CD3-8.3 CD3 CD3 -CD3-9.1 CD3 CD3 -CD3-9.2 CD3 CD3 -CD3-9.3 CD3 CD3 -CD3-10.1 CD3 CD3 -CD3-10.2 CD3 CD3 -CD3-10.3 CD3 CD3 -CD3-11.1 CD3 CD3 -CD3-11.2 CD3 CD3 -CD3-11.3 CD3 CD3 -CD3-12.1 CD3 CD3 -CD3-12.2 CD3 CD3 -CD3-12.3 CD3 CD3 -CD3-13.1 CD3 CD3 -CD3-13.2 CD3 CD3 -CD3-13.3 CD3 CD3 -CD3-14.1 CD3 CD3 -CD3-14.2 CD3 CD3 -CD3-14.3 CD3 CD3 -CD4 CD4 CD4 -CD4-0.1 CD4 CD4 -CD4-0.2 CD4 CD4 -CD4-0.3 CD4 CD4 -CD4-1.1 CD4 CD4 -CD4-1.2 CD4 CD4 -CD4-1.3 CD4 CD4 -CD4-2.1 CD4 CD4 -CD4-2.2 CD4 CD4 -CD4-2.3 CD4 CD4 -CD4-3.1 CD4 CD4 -CD4-3.2 CD4 CD4 -CD4-3.3 CD4 CD4 -CD4-4.1 CD4 CD4 -CD4-4.2 CD4 CD4 -CD4-4.3 CD4 CD4 -CD4-5.1 CD4 CD4 -CD4-5.2 CD4 CD4 -CD4-5.3 CD4 CD4 -CD4-6.1 CD4 CD4 -CD4-6.2 CD4 CD4 -CD4-6.3 CD4 CD4 -CD4-7.1 CD4 CD4 -CD4-7.2 CD4 CD4 -CD4-7.3 CD4 CD4 -CD4-8.1 CD4 CD4 -CD4-8.2 CD4 CD4 -CD4-8.3 CD4 CD4 -CD4-9.1 CD4 CD4 -CD4-9.2 CD4 CD4 -CD4-9.3 CD4 CD4 -CD4-10.1 CD4 CD4 -CD4-10.2 CD4 CD4 -CD4-10.3 CD4 CD4 -CD4-11.1 CD4 CD4 -CD4-11.2 CD4 CD4 -CD4-11.3 CD4 CD4 -CD4-12.1 CD4 CD4 -CD4-12.2 CD4 CD4 -CD4-12.3 CD4 CD4 -CD4-13.1 CD4 CD4 -CD4-13.2 CD4 CD4 -CD4-13.3 CD4 CD4 -CD4-14.1 CD4 CD4 -CD4-14.2 CD4 CD4 -CD4-14.3 CD4 CD4 -CD8a CD8a CD8a -CD8a-0.1 CD8a CD8a -CD8a-0.2 CD8a CD8a -CD8a-0.3 CD8a CD8a -CD8a-1.1 CD8a CD8a -CD8a-1.2 CD8a CD8a -CD8a-1.3 CD8a CD8a -CD8a-2.1 CD8a CD8a -CD8a-2.2 CD8a CD8a -CD8a-2.3 CD8a CD8a -CD8a-3.1 CD8a CD8a -CD8a-3.2 CD8a CD8a -CD8a-3.3 CD8a CD8a -CD8a-4.1 CD8a CD8a -CD8a-4.2 CD8a CD8a -CD8a-4.3 CD8a CD8a -CD8a-5.1 CD8a CD8a -CD8a-5.2 CD8a CD8a -CD8a-5.3 CD8a CD8a -CD8a-6.1 CD8a CD8a -CD8a-6.2 CD8a CD8a -CD8a-6.3 CD8a CD8a -CD8a-7.1 CD8a CD8a -CD8a-7.2 CD8a CD8a -CD8a-7.3 CD8a CD8a -CD8a-8.1 CD8a CD8a -CD8a-8.2 CD8a CD8a -CD8a-8.3 CD8a CD8a -CD8a-9.1 CD8a CD8a -CD8a-9.2 CD8a CD8a -CD8a-9.3 CD8a CD8a -CD8a-10.1 CD8a CD8a -CD8a-10.2 CD8a CD8a -CD8a-10.3 CD8a CD8a -CD8a-11.1 CD8a CD8a -CD8a-11.2 CD8a CD8a -CD8a-11.3 CD8a CD8a -CD8a-12.1 CD8a CD8a -CD8a-12.2 CD8a CD8a -CD8a-12.3 CD8a CD8a -CD8a-13.1 CD8a CD8a -CD8a-13.2 CD8a CD8a -CD8a-13.3 CD8a CD8a -CD8a-14.1 CD8a CD8a -CD8a-14.2 CD8a CD8a -CD8a-14.3 CD8a CD8a -CD14 CD14 CD14 -CD14-0.1 CD14 CD14 -CD14-0.2 CD14 CD14 -CD14-0.3 CD14 CD14 -CD14-1.1 CD14 CD14 -CD14-1.2 CD14 CD14 -CD14-1.3 CD14 CD14 -CD14-2.1 CD14 CD14 -CD14-2.2 CD14 CD14 -CD14-2.3 CD14 CD14 -CD14-3.1 CD14 CD14 -CD14-3.2 CD14 CD14 -CD14-3.3 CD14 CD14 -CD14-4.1 CD14 CD14 -CD14-4.2 CD14 CD14 -CD14-4.3 CD14 CD14 -CD14-5.1 CD14 CD14 -CD14-5.2 CD14 CD14 -CD14-5.3 CD14 CD14 -CD14-6.1 CD14 CD14 -CD14-6.2 CD14 CD14 -CD14-6.3 CD14 CD14 -CD14-7.1 CD14 CD14 -CD14-7.2 CD14 CD14 -CD14-7.3 CD14 CD14 -CD14-8.1 CD14 CD14 -CD14-8.2 CD14 CD14 -CD14-8.3 CD14 CD14 -CD14-9.1 CD14 CD14 -CD14-9.2 CD14 CD14 -CD14-9.3 CD14 CD14 -CD14-10.1 CD14 CD14 -CD14-10.2 CD14 CD14 -CD14-10.3 CD14 CD14 -CD14-11.1 CD14 CD14 -CD14-11.2 CD14 CD14 -CD14-11.3 CD14 CD14 -CD14-12.1 CD14 CD14 -CD14-12.2 CD14 CD14 -CD14-12.3 CD14 CD14 -CD14-13.1 CD14 CD14 -CD14-13.2 CD14 CD14 -CD14-13.3 CD14 CD14 -CD14-14.1 CD14 CD14 -CD14-14.2 CD14 CD14 -CD14-14.3 CD14 CD14 -CD15 CD15 CD15 -CD15-0.1 CD15 CD15 -CD15-0.2 CD15 CD15 -CD15-0.3 CD15 CD15 -CD15-1.1 CD15 CD15 -CD15-1.2 CD15 CD15 -CD15-1.3 CD15 CD15 -CD15-2.1 CD15 CD15 -CD15-2.2 CD15 CD15 -CD15-2.3 CD15 CD15 -CD15-3.1 CD15 CD15 -CD15-3.2 CD15 CD15 -CD15-3.3 CD15 CD15 -CD15-4.1 CD15 CD15 -CD15-4.2 CD15 CD15 -CD15-4.3 CD15 CD15 -CD15-5.1 CD15 CD15 -CD15-5.2 CD15 CD15 -CD15-5.3 CD15 CD15 -CD15-6.1 CD15 CD15 -CD15-6.2 CD15 CD15 -CD15-6.3 CD15 CD15 -CD15-7.1 CD15 CD15 -CD15-7.2 CD15 CD15 -CD15-7.3 CD15 CD15 -CD15-8.1 CD15 CD15 -CD15-8.2 CD15 CD15 -CD15-8.3 CD15 CD15 -CD15-9.1 CD15 CD15 -CD15-9.2 CD15 CD15 -CD15-9.3 CD15 CD15 -CD15-10.1 CD15 CD15 -CD15-10.2 CD15 CD15 -CD15-10.3 CD15 CD15 -CD15-11.1 CD15 CD15 -CD15-11.2 CD15 CD15 -CD15-11.3 CD15 CD15 -CD15-12.1 CD15 CD15 -CD15-12.2 CD15 CD15 -CD15-12.3 CD15 CD15 -CD15-13.1 CD15 CD15 -CD15-13.2 CD15 CD15 -CD15-13.3 CD15 CD15 -CD15-14.1 CD15 CD15 -CD15-14.2 CD15 CD15 -CD15-14.3 CD15 CD15 -CD16 CD16 CD16 -CD16-0.1 CD16 CD16 -CD16-0.2 CD16 CD16 -CD16-0.3 CD16 CD16 -CD16-1.1 CD16 CD16 -CD16-1.2 CD16 CD16 -CD16-1.3 CD16 CD16 -CD16-2.1 CD16 CD16 -CD16-2.2 CD16 CD16 -CD16-2.3 CD16 CD16 -CD16-3.1 CD16 CD16 -CD16-3.2 CD16 CD16 -CD16-3.3 CD16 CD16 -CD16-4.1 CD16 CD16 -CD16-4.2 CD16 CD16 -CD16-4.3 CD16 CD16 -CD16-5.1 CD16 CD16 -CD16-5.2 CD16 CD16 -CD16-5.3 CD16 CD16 -CD16-6.1 CD16 CD16 -CD16-6.2 CD16 CD16 -CD16-6.3 CD16 CD16 -CD16-7.1 CD16 CD16 -CD16-7.2 CD16 CD16 -CD16-7.3 CD16 CD16 -CD16-8.1 CD16 CD16 -CD16-8.2 CD16 CD16 -CD16-8.3 CD16 CD16 -CD16-9.1 CD16 CD16 -CD16-9.2 CD16 CD16 -CD16-9.3 CD16 CD16 -CD16-10.1 CD16 CD16 -CD16-10.2 CD16 CD16 -CD16-10.3 CD16 CD16 -CD16-11.1 CD16 CD16 -CD16-11.2 CD16 CD16 -CD16-11.3 CD16 CD16 -CD16-12.1 CD16 CD16 -CD16-12.2 CD16 CD16 -CD16-12.3 CD16 CD16 -CD16-13.1 CD16 CD16 -CD16-13.2 CD16 CD16 -CD16-13.3 CD16 CD16 -CD16-14.1 CD16 CD16 -CD16-14.2 CD16 CD16 -CD16-14.3 CD16 CD16 -CD56 CD56 CD56 -CD56-0.1 CD56 CD56 -CD56-0.2 CD56 CD56 -CD56-0.3 CD56 CD56 -CD56-1.1 CD56 CD56 -CD56-1.2 CD56 CD56 -CD56-1.3 CD56 CD56 -CD56-2.1 CD56 CD56 -CD56-2.2 CD56 CD56 -CD56-2.3 CD56 CD56 -CD56-3.1 CD56 CD56 -CD56-3.2 CD56 CD56 -CD56-3.3 CD56 CD56 -CD56-4.1 CD56 CD56 -CD56-4.2 CD56 CD56 -CD56-4.3 CD56 CD56 -CD56-5.1 CD56 CD56 -CD56-5.2 CD56 CD56 -CD56-5.3 CD56 CD56 -CD56-6.1 CD56 CD56 -CD56-6.2 CD56 CD56 -CD56-6.3 CD56 CD56 -CD56-7.1 CD56 CD56 -CD56-7.2 CD56 CD56 -CD56-7.3 CD56 CD56 -CD56-8.1 CD56 CD56 -CD56-8.2 CD56 CD56 -CD56-8.3 CD56 CD56 -CD56-9.1 CD56 CD56 -CD56-9.2 CD56 CD56 -CD56-9.3 CD56 CD56 -CD56-10.1 CD56 CD56 -CD56-10.2 CD56 CD56 -CD56-10.3 CD56 CD56 -CD56-11.1 CD56 CD56 -CD56-11.2 CD56 CD56 -CD56-11.3 CD56 CD56 -CD56-12.1 CD56 CD56 -CD56-12.2 CD56 CD56 -CD56-12.3 CD56 CD56 -CD56-13.1 CD56 CD56 -CD56-13.2 CD56 CD56 -CD56-13.3 CD56 CD56 -CD56-14.1 CD56 CD56 -CD56-14.2 CD56 CD56 -CD56-14.3 CD56 CD56 -CD19 CD19 CD19 -CD19-0.1 CD19 CD19 -CD19-0.2 CD19 CD19 -CD19-0.3 CD19 CD19 -CD19-1.1 CD19 CD19 -CD19-1.2 CD19 CD19 -CD19-1.3 CD19 CD19 -CD19-2.1 CD19 CD19 -CD19-2.2 CD19 CD19 -CD19-2.3 CD19 CD19 -CD19-3.1 CD19 CD19 -CD19-3.2 CD19 CD19 -CD19-3.3 CD19 CD19 -CD19-4.1 CD19 CD19 -CD19-4.2 CD19 CD19 -CD19-4.3 CD19 CD19 -CD19-5.1 CD19 CD19 -CD19-5.2 CD19 CD19 -CD19-5.3 CD19 CD19 -CD19-6.1 CD19 CD19 -CD19-6.2 CD19 CD19 -CD19-6.3 CD19 CD19 -CD19-7.1 CD19 CD19 -CD19-7.2 CD19 CD19 -CD19-7.3 CD19 CD19 -CD19-8.1 CD19 CD19 -CD19-8.2 CD19 CD19 -CD19-8.3 CD19 CD19 -CD19-9.1 CD19 CD19 -CD19-9.2 CD19 CD19 -CD19-9.3 CD19 CD19 -CD19-10.1 CD19 CD19 -CD19-10.2 CD19 CD19 -CD19-10.3 CD19 CD19 -CD19-11.1 CD19 CD19 -CD19-11.2 CD19 CD19 -CD19-11.3 CD19 CD19 -CD19-12.1 CD19 CD19 -CD19-12.2 CD19 CD19 -CD19-12.3 CD19 CD19 -CD19-13.1 CD19 CD19 -CD19-13.2 CD19 CD19 -CD19-13.3 CD19 CD19 -CD19-14.1 CD19 CD19 -CD19-14.2 CD19 CD19 -CD19-14.3 CD19 CD19 -CD25 CD25 CD25 -CD25-0.1 CD25 CD25 -CD25-0.2 CD25 CD25 -CD25-0.3 CD25 CD25 -CD25-1.1 CD25 CD25 -CD25-1.2 CD25 CD25 -CD25-1.3 CD25 CD25 -CD25-2.1 CD25 CD25 -CD25-2.2 CD25 CD25 -CD25-2.3 CD25 CD25 -CD25-3.1 CD25 CD25 -CD25-3.2 CD25 CD25 -CD25-3.3 CD25 CD25 -CD25-4.1 CD25 CD25 -CD25-4.2 CD25 CD25 -CD25-4.3 CD25 CD25 -CD25-5.1 CD25 CD25 -CD25-5.2 CD25 CD25 -CD25-5.3 CD25 CD25 -CD25-6.1 CD25 CD25 -CD25-6.2 CD25 CD25 -CD25-6.3 CD25 CD25 -CD25-7.1 CD25 CD25 -CD25-7.2 CD25 CD25 -CD25-7.3 CD25 CD25 -CD25-8.1 CD25 CD25 -CD25-8.2 CD25 CD25 -CD25-8.3 CD25 CD25 -CD25-9.1 CD25 CD25 -CD25-9.2 CD25 CD25 -CD25-9.3 CD25 CD25 -CD25-10.1 CD25 CD25 -CD25-10.2 CD25 CD25 -CD25-10.3 CD25 CD25 -CD25-11.1 CD25 CD25 -CD25-11.2 CD25 CD25 -CD25-11.3 CD25 CD25 -CD25-12.1 CD25 CD25 -CD25-12.2 CD25 CD25 -CD25-12.3 CD25 CD25 -CD25-13.1 CD25 CD25 -CD25-13.2 CD25 CD25 -CD25-13.3 CD25 CD25 -CD25-14.1 CD25 CD25 -CD25-14.2 CD25 CD25 -CD25-14.3 CD25 CD25 -CD45RA CD45RA CD45RA -CD45RA-0.1 CD45RA CD45RA -CD45RA-0.2 CD45RA CD45RA -CD45RA-0.3 CD45RA CD45RA -CD45RA-1.1 CD45RA CD45RA -CD45RA-1.2 CD45RA CD45RA -CD45RA-1.3 CD45RA CD45RA -CD45RA-2.1 CD45RA CD45RA -CD45RA-2.2 CD45RA CD45RA -CD45RA-2.3 CD45RA CD45RA -CD45RA-3.1 CD45RA CD45RA -CD45RA-3.2 CD45RA CD45RA -CD45RA-3.3 CD45RA CD45RA -CD45RA-4.1 CD45RA CD45RA -CD45RA-4.2 CD45RA CD45RA -CD45RA-4.3 CD45RA CD45RA -CD45RA-5.1 CD45RA CD45RA -CD45RA-5.2 CD45RA CD45RA -CD45RA-5.3 CD45RA CD45RA -CD45RA-6.1 CD45RA CD45RA -CD45RA-6.2 CD45RA CD45RA -CD45RA-6.3 CD45RA CD45RA -CD45RA-7.1 CD45RA CD45RA -CD45RA-7.2 CD45RA CD45RA -CD45RA-7.3 CD45RA CD45RA -CD45RA-8.1 CD45RA CD45RA -CD45RA-8.2 CD45RA CD45RA -CD45RA-8.3 CD45RA CD45RA -CD45RA-9.1 CD45RA CD45RA -CD45RA-9.2 CD45RA CD45RA -CD45RA-9.3 CD45RA CD45RA -CD45RA-10.1 CD45RA CD45RA -CD45RA-10.2 CD45RA CD45RA -CD45RA-10.3 CD45RA CD45RA -CD45RA-11.1 CD45RA CD45RA -CD45RA-11.2 CD45RA CD45RA -CD45RA-11.3 CD45RA CD45RA -CD45RA-12.1 CD45RA CD45RA -CD45RA-12.2 CD45RA CD45RA -CD45RA-12.3 CD45RA CD45RA -CD45RA-13.1 CD45RA CD45RA -CD45RA-13.2 CD45RA CD45RA -CD45RA-13.3 CD45RA CD45RA -CD45RA-14.1 CD45RA CD45RA -CD45RA-14.2 CD45RA CD45RA -CD45RA-14.3 CD45RA CD45RA -CD45RO CD45RO CD45RO -CD45RO-0.1 CD45RO CD45RO -CD45RO-0.2 CD45RO CD45RO -CD45RO-0.3 CD45RO CD45RO -CD45RO-1.1 CD45RO CD45RO -CD45RO-1.2 CD45RO CD45RO -CD45RO-1.3 CD45RO CD45RO -CD45RO-2.1 CD45RO CD45RO -CD45RO-2.2 CD45RO CD45RO -CD45RO-2.3 CD45RO CD45RO -CD45RO-3.1 CD45RO CD45RO -CD45RO-3.2 CD45RO CD45RO -CD45RO-3.3 CD45RO CD45RO -CD45RO-4.1 CD45RO CD45RO -CD45RO-4.2 CD45RO CD45RO -CD45RO-4.3 CD45RO CD45RO -CD45RO-5.1 CD45RO CD45RO -CD45RO-5.2 CD45RO CD45RO -CD45RO-5.3 CD45RO CD45RO -CD45RO-6.1 CD45RO CD45RO -CD45RO-6.2 CD45RO CD45RO -CD45RO-6.3 CD45RO CD45RO -CD45RO-7.1 CD45RO CD45RO -CD45RO-7.2 CD45RO CD45RO -CD45RO-7.3 CD45RO CD45RO -CD45RO-8.1 CD45RO CD45RO -CD45RO-8.2 CD45RO CD45RO -CD45RO-8.3 CD45RO CD45RO -CD45RO-9.1 CD45RO CD45RO -CD45RO-9.2 CD45RO CD45RO -CD45RO-9.3 CD45RO CD45RO -CD45RO-10.1 CD45RO CD45RO -CD45RO-10.2 CD45RO CD45RO -CD45RO-10.3 CD45RO CD45RO -CD45RO-11.1 CD45RO CD45RO -CD45RO-11.2 CD45RO CD45RO -CD45RO-11.3 CD45RO CD45RO -CD45RO-12.1 CD45RO CD45RO -CD45RO-12.2 CD45RO CD45RO -CD45RO-12.3 CD45RO CD45RO -CD45RO-13.1 CD45RO CD45RO -CD45RO-13.2 CD45RO CD45RO -CD45RO-13.3 CD45RO CD45RO -CD45RO-14.1 CD45RO CD45RO -CD45RO-14.2 CD45RO CD45RO -CD45RO-14.3 CD45RO CD45RO -PD-1 PD-1 PD-1 -PD-1-0.1 PD-1 PD-1 -PD-1-0.2 PD-1 PD-1 -PD-1-0.3 PD-1 PD-1 -PD-1-1.1 PD-1 PD-1 -PD-1-1.2 PD-1 PD-1 -PD-1-1.3 PD-1 PD-1 -PD-1-2.1 PD-1 PD-1 -PD-1-2.2 PD-1 PD-1 -PD-1-2.3 PD-1 PD-1 -PD-1-3.1 PD-1 PD-1 -PD-1-3.2 PD-1 PD-1 -PD-1-3.3 PD-1 PD-1 -PD-1-4.1 PD-1 PD-1 -PD-1-4.2 PD-1 PD-1 -PD-1-4.3 PD-1 PD-1 -PD-1-5.1 PD-1 PD-1 -PD-1-5.2 PD-1 PD-1 -PD-1-5.3 PD-1 PD-1 -PD-1-6.1 PD-1 PD-1 -PD-1-6.2 PD-1 PD-1 -PD-1-6.3 PD-1 PD-1 -PD-1-7.1 PD-1 PD-1 -PD-1-7.2 PD-1 PD-1 -PD-1-7.3 PD-1 PD-1 -PD-1-8.1 PD-1 PD-1 -PD-1-8.2 PD-1 PD-1 -PD-1-8.3 PD-1 PD-1 -PD-1-9.1 PD-1 PD-1 -PD-1-9.2 PD-1 PD-1 -PD-1-9.3 PD-1 PD-1 -PD-1-10.1 PD-1 PD-1 -PD-1-10.2 PD-1 PD-1 -PD-1-10.3 PD-1 PD-1 -PD-1-11.1 PD-1 PD-1 -PD-1-11.2 PD-1 PD-1 -PD-1-11.3 PD-1 PD-1 -PD-1-12.1 PD-1 PD-1 -PD-1-12.2 PD-1 PD-1 -PD-1-12.3 PD-1 PD-1 -PD-1-13.1 PD-1 PD-1 -PD-1-13.2 PD-1 PD-1 -PD-1-13.3 PD-1 PD-1 -PD-1-14.1 PD-1 PD-1 -PD-1-14.2 PD-1 PD-1 -PD-1-14.3 PD-1 PD-1 -TIGIT TIGIT TIGIT -TIGIT-0.1 TIGIT TIGIT -TIGIT-0.2 TIGIT TIGIT -TIGIT-0.3 TIGIT TIGIT -TIGIT-1.1 TIGIT TIGIT -TIGIT-1.2 TIGIT TIGIT -TIGIT-1.3 TIGIT TIGIT -TIGIT-2.1 TIGIT TIGIT -TIGIT-2.2 TIGIT TIGIT -TIGIT-2.3 TIGIT TIGIT -TIGIT-3.1 TIGIT TIGIT -TIGIT-3.2 TIGIT TIGIT -TIGIT-3.3 TIGIT TIGIT -TIGIT-4.1 TIGIT TIGIT -TIGIT-4.2 TIGIT TIGIT -TIGIT-4.3 TIGIT TIGIT -TIGIT-5.1 TIGIT TIGIT -TIGIT-5.2 TIGIT TIGIT -TIGIT-5.3 TIGIT TIGIT -TIGIT-6.1 TIGIT TIGIT -TIGIT-6.2 TIGIT TIGIT -TIGIT-6.3 TIGIT TIGIT -TIGIT-7.1 TIGIT TIGIT -TIGIT-7.2 TIGIT TIGIT -TIGIT-7.3 TIGIT TIGIT -TIGIT-8.1 TIGIT TIGIT -TIGIT-8.2 TIGIT TIGIT -TIGIT-8.3 TIGIT TIGIT -TIGIT-9.1 TIGIT TIGIT -TIGIT-9.2 TIGIT TIGIT -TIGIT-9.3 TIGIT TIGIT -TIGIT-10.1 TIGIT TIGIT -TIGIT-10.2 TIGIT TIGIT -TIGIT-10.3 TIGIT TIGIT -TIGIT-11.1 TIGIT TIGIT -TIGIT-11.2 TIGIT TIGIT -TIGIT-11.3 TIGIT TIGIT -TIGIT-12.1 TIGIT TIGIT -TIGIT-12.2 TIGIT TIGIT -TIGIT-12.3 TIGIT TIGIT -TIGIT-13.1 TIGIT TIGIT -TIGIT-13.2 TIGIT TIGIT -TIGIT-13.3 TIGIT TIGIT -TIGIT-14.1 TIGIT TIGIT -TIGIT-14.2 TIGIT TIGIT -TIGIT-14.3 TIGIT TIGIT -CD127 CD127 CD127 -CD127-0.1 CD127 CD127 -CD127-0.2 CD127 CD127 -CD127-0.3 CD127 CD127 -CD127-1.1 CD127 CD127 -CD127-1.2 CD127 CD127 -CD127-1.3 CD127 CD127 -CD127-2.1 CD127 CD127 -CD127-2.2 CD127 CD127 -CD127-2.3 CD127 CD127 -CD127-3.1 CD127 CD127 -CD127-3.2 CD127 CD127 -CD127-3.3 CD127 CD127 -CD127-4.1 CD127 CD127 -CD127-4.2 CD127 CD127 -CD127-4.3 CD127 CD127 -CD127-5.1 CD127 CD127 -CD127-5.2 CD127 CD127 -CD127-5.3 CD127 CD127 -CD127-6.1 CD127 CD127 -CD127-6.2 CD127 CD127 -CD127-6.3 CD127 CD127 -CD127-7.1 CD127 CD127 -CD127-7.2 CD127 CD127 -CD127-7.3 CD127 CD127 -CD127-8.1 CD127 CD127 -CD127-8.2 CD127 CD127 -CD127-8.3 CD127 CD127 -CD127-9.1 CD127 CD127 -CD127-9.2 CD127 CD127 -CD127-9.3 CD127 CD127 -CD127-10.1 CD127 CD127 -CD127-10.2 CD127 CD127 -CD127-10.3 CD127 CD127 -CD127-11.1 CD127 CD127 -CD127-11.2 CD127 CD127 -CD127-11.3 CD127 CD127 -CD127-12.1 CD127 CD127 -CD127-12.2 CD127 CD127 -CD127-12.3 CD127 CD127 -CD127-13.1 CD127 CD127 -CD127-13.2 CD127 CD127 -CD127-13.3 CD127 CD127 -CD127-14.1 CD127 CD127 -CD127-14.2 CD127 CD127 -CD127-14.3 CD127 CD127 -IgG2a IgG2a IgG2a -IgG2a-0.1 IgG2a IgG2a -IgG2a-0.2 IgG2a IgG2a -IgG2a-0.3 IgG2a IgG2a -IgG2a-1.1 IgG2a IgG2a -IgG2a-1.2 IgG2a IgG2a -IgG2a-1.3 IgG2a IgG2a -IgG2a-2.1 IgG2a IgG2a -IgG2a-2.2 IgG2a IgG2a -IgG2a-2.3 IgG2a IgG2a -IgG2a-3.1 IgG2a IgG2a -IgG2a-3.2 IgG2a IgG2a -IgG2a-3.3 IgG2a IgG2a -IgG2a-4.1 IgG2a IgG2a -IgG2a-4.2 IgG2a IgG2a -IgG2a-4.3 IgG2a IgG2a -IgG2a-5.1 IgG2a IgG2a -IgG2a-5.2 IgG2a IgG2a -IgG2a-5.3 IgG2a IgG2a -IgG2a-6.1 IgG2a IgG2a -IgG2a-6.2 IgG2a IgG2a -IgG2a-6.3 IgG2a IgG2a -IgG2a-7.1 IgG2a IgG2a -IgG2a-7.2 IgG2a IgG2a -IgG2a-7.3 IgG2a IgG2a -IgG2a-8.1 IgG2a IgG2a -IgG2a-8.2 IgG2a IgG2a -IgG2a-8.3 IgG2a IgG2a -IgG2a-9.1 IgG2a IgG2a -IgG2a-9.2 IgG2a IgG2a -IgG2a-9.3 IgG2a IgG2a -IgG2a-10.1 IgG2a IgG2a -IgG2a-10.2 IgG2a IgG2a -IgG2a-10.3 IgG2a IgG2a -IgG2a-11.1 IgG2a IgG2a -IgG2a-11.2 IgG2a IgG2a -IgG2a-11.3 IgG2a IgG2a -IgG2a-12.1 IgG2a IgG2a -IgG2a-12.2 IgG2a IgG2a -IgG2a-12.3 IgG2a IgG2a -IgG2a-13.1 IgG2a IgG2a -IgG2a-13.2 IgG2a IgG2a -IgG2a-13.3 IgG2a IgG2a -IgG2a-14.1 IgG2a IgG2a -IgG2a-14.2 IgG2a IgG2a -IgG2a-14.3 IgG2a IgG2a -IgG1 IgG1 IgG1 -IgG1-0.1 IgG1 IgG1 -IgG1-0.2 IgG1 IgG1 -IgG1-0.3 IgG1 IgG1 -IgG1-1.1 IgG1 IgG1 -IgG1-1.2 IgG1 IgG1 -IgG1-1.3 IgG1 IgG1 -IgG1-2.1 IgG1 IgG1 -IgG1-2.2 IgG1 IgG1 -IgG1-2.3 IgG1 IgG1 -IgG1-3.1 IgG1 IgG1 -IgG1-3.2 IgG1 IgG1 -IgG1-3.3 IgG1 IgG1 -IgG1-4.1 IgG1 IgG1 -IgG1-4.2 IgG1 IgG1 -IgG1-4.3 IgG1 IgG1 -IgG1-5.1 IgG1 IgG1 -IgG1-5.2 IgG1 IgG1 -IgG1-5.3 IgG1 IgG1 -IgG1-6.1 IgG1 IgG1 -IgG1-6.2 IgG1 IgG1 -IgG1-6.3 IgG1 IgG1 -IgG1-7.1 IgG1 IgG1 -IgG1-7.2 IgG1 IgG1 -IgG1-7.3 IgG1 IgG1 -IgG1-8.1 IgG1 IgG1 -IgG1-8.2 IgG1 IgG1 -IgG1-8.3 IgG1 IgG1 -IgG1-9.1 IgG1 IgG1 -IgG1-9.2 IgG1 IgG1 -IgG1-9.3 IgG1 IgG1 -IgG1-10.1 IgG1 IgG1 -IgG1-10.2 IgG1 IgG1 -IgG1-10.3 IgG1 IgG1 -IgG1-11.1 IgG1 IgG1 -IgG1-11.2 IgG1 IgG1 -IgG1-11.3 IgG1 IgG1 -IgG1-12.1 IgG1 IgG1 -IgG1-12.2 IgG1 IgG1 -IgG1-12.3 IgG1 IgG1 -IgG1-13.1 IgG1 IgG1 -IgG1-13.2 IgG1 IgG1 -IgG1-13.3 IgG1 IgG1 -IgG1-14.1 IgG1 IgG1 -IgG1-14.2 IgG1 IgG1 -IgG1-14.3 IgG1 IgG1 -IgG2b IgG2b IgG2b -IgG2b-0.1 IgG2b IgG2b -IgG2b-0.2 IgG2b IgG2b -IgG2b-0.3 IgG2b IgG2b -IgG2b-1.1 IgG2b IgG2b -IgG2b-1.2 IgG2b IgG2b -IgG2b-1.3 IgG2b IgG2b -IgG2b-2.1 IgG2b IgG2b -IgG2b-2.2 IgG2b IgG2b -IgG2b-2.3 IgG2b IgG2b -IgG2b-3.1 IgG2b IgG2b -IgG2b-3.2 IgG2b IgG2b -IgG2b-3.3 IgG2b IgG2b -IgG2b-4.1 IgG2b IgG2b -IgG2b-4.2 IgG2b IgG2b -IgG2b-4.3 IgG2b IgG2b -IgG2b-5.1 IgG2b IgG2b -IgG2b-5.2 IgG2b IgG2b -IgG2b-5.3 IgG2b IgG2b -IgG2b-6.1 IgG2b IgG2b -IgG2b-6.2 IgG2b IgG2b -IgG2b-6.3 IgG2b IgG2b -IgG2b-7.1 IgG2b IgG2b -IgG2b-7.2 IgG2b IgG2b -IgG2b-7.3 IgG2b IgG2b -IgG2b-8.1 IgG2b IgG2b -IgG2b-8.2 IgG2b IgG2b -IgG2b-8.3 IgG2b IgG2b -IgG2b-9.1 IgG2b IgG2b -IgG2b-9.2 IgG2b IgG2b -IgG2b-9.3 IgG2b IgG2b -IgG2b-10.1 IgG2b IgG2b -IgG2b-10.2 IgG2b IgG2b -IgG2b-10.3 IgG2b IgG2b -IgG2b-11.1 IgG2b IgG2b -IgG2b-11.2 IgG2b IgG2b -IgG2b-11.3 IgG2b IgG2b -IgG2b-12.1 IgG2b IgG2b -IgG2b-12.2 IgG2b IgG2b -IgG2b-12.3 IgG2b IgG2b -IgG2b-13.1 IgG2b IgG2b -IgG2b-13.2 IgG2b IgG2b -IgG2b-13.3 IgG2b IgG2b -IgG2b-14.1 IgG2b IgG2b -IgG2b-14.2 IgG2b IgG2b -IgG2b-14.3 IgG2b IgG2b diff --git a/tests/data/delete_me/kallistobustools/count/t2g.txt b/tests/data/delete_me/kallistobustools/count/t2g.txt deleted file mode 100644 index 81306925..00000000 --- a/tests/data/delete_me/kallistobustools/count/t2g.txt +++ /dev/null @@ -1,46 +0,0 @@ -ENSMUST00000237047.2 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-209 chr19 3103071 3247732 - -ENSMUST00000236704.2 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-208 chr19 3115711 3247714 - -ENSMUST00000190575.7 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-203 chr19 3115711 3247714 - -ENSMUST00000235916.2 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-207 chr19 3195868 3247716 - -ENSMUST00000189643.2 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-201 chr19 3195870 3210190 - -ENSMUST00000191405.7 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-206 chr19 3195946 3210181 - -ENSMUST00000190668.7 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-204 chr19 3199813 3247698 - -ENSMUST00000190982.7 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-205 chr19 3203208 3247698 - -ENSMUST00000190259.2 ENSMUSG00000100969.8 1700030N03Rik 1700030N03Rik-202 chr19 3203799 3247703 - -ENSMUST00000235610.2 ENSMUSG00000117761.2 Gm50428 Gm50428-201 chr19 3184645 3184959 + -ENSMUST00000101978.3 ENSMUSG00000118966.1 AC162463.2 AC162463.2-201 chr19 3186984 3187090 - -ENSMUST00000235785.2 ENSMUSG00000118182.2 Gm50427 Gm50427-201 chr19 3192760 3193065 + -ENSMUST00000237449.2 ENSMUSG00000117928.2 Gm42068 Gm42068-201 chr19 3206623 3207012 + -ENSMUST00000240363.1 ENSMUSG00000118771.1 AC162463.1 AC162463.1-201 chr19 3207710 3207835 - -ENSMUST00000236616.2 ENSMUSG00000118393.2 Gm50426 Gm50426-201 chr19 3234959 3235273 + -ENSMUST00000236294.2 ENSMUSG00000118052.2 Gm50432 Gm50432-202 chr19 3255607 3256258 + -ENSMUST00000235308.2 ENSMUSG00000118052.2 Gm50432 Gm50432-201 chr19 3255793 3256070 + -ENSMUST00000236416.2 ENSMUSG00000118203.2 Gm7798 Gm7798-201 chr19 3298804 3300214 + -ENSMUST00000237524.2 ENSMUSG00000117886.2 Gm2106 Gm2106-201 chr19 3303518 3305067 - -ENSMUST00000025751.11 ENSMUSG00000024831.15 Ighmbp2 Ighmbp2-201 chr19 3309076 3333017 - -ENSMUST00000119292.8 ENSMUSG00000024831.15 Ighmbp2 Ighmbp2-202 chr19 3310924 3332979 - -ENSMUST00000154537.8 ENSMUSG00000024831.15 Ighmbp2 Ighmbp2-204 chr19 3314818 3332980 - -ENSMUST00000143079.2 ENSMUSG00000024831.15 Ighmbp2 Ighmbp2-203 chr19 3315364 3317716 - -ENSMUST00000025745.10 ENSMUSG00000024829.13 Mrpl21 Mrpl21-202 chr19 3332901 3342837 + -ENSMUST00000139844.8 ENSMUSG00000024829.13 Mrpl21 Mrpl21-203 chr19 3333055 3339179 + -ENSMUST00000155870.2 ENSMUSG00000024829.13 Mrpl21 Mrpl21-206 chr19 3333060 3335325 + -ENSMUST00000025743.7 ENSMUSG00000024829.13 Mrpl21 Mrpl21-201 chr19 3333060 3341201 + -ENSMUST00000141610.2 ENSMUSG00000024829.13 Mrpl21 Mrpl21-204 chr19 3333064 3337739 + -ENSMUST00000154785.2 ENSMUSG00000024829.13 Mrpl21 Mrpl21-205 chr19 3336811 3341195 + -ENSMUST00000185105.3 ENSMUSG00000099261.3 Mir6984 Mir6984-201 chr19 3338920 3338983 + -ENSMUST00000237542.2 ENSMUSG00000118213.2 Gm50307 Gm50307-201 chr19 3366782 3367581 - -ENSMUST00000237938.2 ENSMUSG00000024900.6 Cpt1a Cpt1a-206 chr19 3372334 3420748 + -ENSMUST00000025835.6 ENSMUSG00000024900.6 Cpt1a Cpt1a-201 chr19 3373285 3435733 + -ENSMUST00000235968.2 ENSMUSG00000024900.6 Cpt1a Cpt1a-202 chr19 3373348 3401674 + -ENSMUST00000237562.2 ENSMUSG00000024900.6 Cpt1a Cpt1a-205 chr19 3383725 3408277 + -ENSMUST00000238015.2 ENSMUSG00000024900.6 Cpt1a Cpt1a-207 chr19 3391627 3414538 + -ENSMUST00000237457.2 ENSMUSG00000024900.6 Cpt1a Cpt1a-204 chr19 3416330 3419217 + -ENSMUST00000237444.2 ENSMUSG00000024900.6 Cpt1a Cpt1a-203 chr19 3425040 3428498 + -ENSMUST00000238027.2 ENSMUSG00000024900.6 Cpt1a Cpt1a-208 chr19 3426344 3433866 + -ENSMUST00000025840.16 ENSMUSG00000024905.16 Tesmin Tesmin-201 chr19 3438857 3457823 + -ENSMUST00000151341.8 ENSMUSG00000024905.16 Tesmin Tesmin-204 chr19 3438885 3448172 + -ENSMUST00000127142.2 ENSMUSG00000024905.16 Tesmin Tesmin-202 chr19 3439379 3457289 + -ENSMUST00000142193.8 ENSMUSG00000024905.16 Tesmin Tesmin-203 chr19 3439379 3457785 + -ENSMUST00000237521.2 ENSMUSG00000024907.8 Gal Gal-202 chr19 3459915 3464544 - -ENSMUST00000025842.8 ENSMUSG00000024907.8 Gal Gal-201 chr19 3459932 3464447 - -ENSMUST00000025846.16 ENSMUSG00000024908.16 Ppp6r3 Ppp6r3-201 chr19 3504928 3625720 -