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fix args in nextflow.config
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1 changed files with 1 additions and 1 deletions
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@ -3,7 +3,7 @@ process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: PICARD_MARKDUPLICATES_UNSORTED {
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ext.args = 'ASSUME_SORT_ORDER=queryname'
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ext.args = '--ASSUME_SORT_ORDER queryname'
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}
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}
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