fix args in nextflow.config

This commit is contained in:
Matthias De Smet 2022-04-29 10:13:22 +02:00
parent 0e01d703ea
commit bda132191d

View file

@ -3,7 +3,7 @@ process {
publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
withName: PICARD_MARKDUPLICATES_UNSORTED {
ext.args = 'ASSUME_SORT_ORDER=queryname'
ext.args = '--ASSUME_SORT_ORDER queryname'
}
}