From bee23ba899dd285566d1816f7c1daca90cc26673 Mon Sep 17 00:00:00 2001 From: "Maxime U. Garcia" Date: Fri, 16 Jul 2021 11:18:27 +0200 Subject: [PATCH] fix: update to gatk4.2.0.0 (#576) --- modules/gatk4/samtofastq/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/gatk4/samtofastq/main.nf b/modules/gatk4/samtofastq/main.nf index 00d5d359..486d6b5d 100644 --- a/modules/gatk4/samtofastq/main.nf +++ b/modules/gatk4/samtofastq/main.nf @@ -11,11 +11,11 @@ process GATK4_SAMTOFASTQ { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } - conda (params.enable_conda ? 'bioconda::gatk4=4.1.9.0' : null) + conda (params.enable_conda ? "bioconda::gatk4=4.2.0.0" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container 'https://depot.galaxyproject.org/singularity/gatk4:4.1.9.0--py39_0' + container "https://depot.galaxyproject.org/singularity/gatk4:4.2.0.0--0" } else { - container 'quay.io/biocontainers/gatk4:4.1.9.0--py39_0' + container "quay.io/biocontainers/gatk4:4.2.0.0--0" } input: