From bf165afd1648853e3463f8279a21e660d8eb91ec Mon Sep 17 00:00:00 2001
From: Edmund Miller <edmund.a.miller@protonmail.com>
Date: Mon, 12 Apr 2021 14:40:36 -0500
Subject: [PATCH] ci: Seperate out out copying nextflow to bin

---
 .github/workflows/nf-core-linting.yml | 10 ++++++----
 .github/workflows/pytest-workflow.yml |  9 +++++----
 2 files changed, 11 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/nf-core-linting.yml b/.github/workflows/nf-core-linting.yml
index 11760eb1..5e938048 100644
--- a/.github/workflows/nf-core-linting.yml
+++ b/.github/workflows/nf-core-linting.yml
@@ -56,16 +56,18 @@ jobs:
       - uses: actions/cache@v2
         id: cache-nextflow
         with:
-          path: /usr/local/bin/nextflow
+          path: nextflow
           key: ${{ runner.os }}-nextflow
 
       - name: Install Nextflow
         if: steps.cache-nextflow.outputs.cache-hit != 'true'
         env:
+          NXF_VER: ${{ matrix.nxf_version }}
           CAPSULE_LOG: none
-        run: |
-          wget -qO- get.nextflow.io | bash
-          sudo mv nextflow /usr/local/bin/
+        run: wget -qO- get.nextflow.io | bash
+
+      - name: Copy nextflow to bin
+        run: sudo cp nextflow /usr/local/bin/
 
       - name: Lint ${{ matrix.tags }}
         run: nf-core modules lint . -t ${{ matrix.tags }}
diff --git a/.github/workflows/pytest-workflow.yml b/.github/workflows/pytest-workflow.yml
index 75cbaaee..465940e4 100644
--- a/.github/workflows/pytest-workflow.yml
+++ b/.github/workflows/pytest-workflow.yml
@@ -51,7 +51,7 @@ jobs:
       - uses: actions/cache@v2
         id: cache-nextflow
         with:
-          path: /usr/local/bin/nextflow
+          path: nextflow
           key: ${{ runner.os }}-nextflow
 
       - name: Install Nextflow
@@ -59,9 +59,10 @@ jobs:
         env:
           NXF_VER: ${{ matrix.nxf_version }}
           CAPSULE_LOG: none
-        run: |
-          wget -qO- get.nextflow.io | bash
-          sudo mv nextflow /usr/local/bin/
+        run: wget -qO- get.nextflow.io | bash
+
+      - name: Copy nextflow to bin
+        run: sudo cp nextflow /usr/local/bin/
 
       - name: Set up Singularity
         if: matrix.profile == 'singularity'