diff --git a/tools/umi_tools/dedup/test/test.nf b/tools/umi_tools/dedup/test/test.nf
index e69de29b..6000279b 100644
--- a/tools/umi_tools/dedup/test/test.nf
+++ b/tools/umi_tools/dedup/test/test.nf
@@ -0,0 +1,59 @@
+#!/usr/bin/env nextflow
+
+// Define DSL2
+nextflow.preview.dsl=2
+
+// Log
+log.info ("Starting test pipeline for BAM deduplication")
+
+/* Module inclusions 
+--------------------------------------------------------------------------------------*/
+
+include umi_tools from './umi-tools.nf'
+
+/*------------------------------------------------------------------------------------*/
+/* Define input channels
+--------------------------------------------------------------------------------------*/
+
+testMetaDataBam = [
+  ['Sample1', "$baseDir/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bam"],
+  ['Sample2', "$baseDir/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bam"],
+  ['Sample3', "$baseDir/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bam"],
+  ['Sample4', "$baseDir/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bam"],
+  ['Sample5', "$baseDir/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bam"],
+  ['Sample6', "$baseDir/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bam"]
+]
+
+testMetaDataBai = [
+  ['Sample1', "$baseDir/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bai"],
+  ['Sample2', "$baseDir/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bai"],
+  ['Sample3', "$baseDir/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bai"],
+  ['Sample4', "$baseDir/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bai"],
+  ['Sample5', "$baseDir/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bai"],
+  ['Sample6', "$baseDir/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bai"]
+]
+
+// Create channels of test data 
+
+//Bam input channel
+Channel
+  .from(testMetaDataBam)
+  .map { row -> [ row[0], file(row[1], checkIfExists: true) ]}
+  .set {ch_test_meta_bam}
+
+//BamBai input channel
+Channel
+  .from(testMetaDataBai)
+  .map { row -> [ row[0], file(row[1], checkIfExists: true) ] }
+  .join(ch_test_meta_bam)
+  .set {ch_test_meta_bambai} 
+
+// Run workflow
+workflow {
+
+    // Run dedup
+    umi_tools( ch_test_meta_bambai )
+
+    // Collect file names and view output
+    umi_tools.out.dedupBam | view
+}
\ No newline at end of file