Using bedtools{_,-}genomecov instead of genomecov alone

software/bedtools/genomecov/main.nf

@@ -1,18 +1,18 @@
-process GENOMECOV {
+process BEDTOOLS_GENOMECOV {
     tag {bam}
 
     container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
 
     input:
-        path (bam)
-        path (chrom_sizes)
-        val (genomecov_args)
+    path (bam)
+    path (chrom_sizes)
+    val (bedtools_genomecov_args)
 
     output:
-        stdout()
+    stdout()
 
     script:
     """
-    bedtools genomecov -ibam ${bam} -g ${chrom_sizes} ${genomecov_args}
+    bedtools genomecov -ibam ${bam} -g ${chrom_sizes} ${bedtools_genomecov_args}
     """
 }

software/bedtools/genomecov/meta.yml

@@ -1,7 +1,7 @@
 name: bedtools genomecov
 description: Returns feature coverage for a given genome in different formats
 keywords:
-    - complement
+    - genomecov
 tools:
     - bedtools:
         description: |

software/bedtools/genomecov/test/main.nf

@@ -2,10 +2,10 @@
 
 nextflow.preview.dsl = 2
 
-params.genomecov_args = '' //'-bg'
+params.bedtools_genomecov_args = '' //'-bg'
 
 include check_output from  '../../../../tests/functions/check_process_outputs.nf' // params(params)
-include GENOMECOV from '../main.nf' params(params)
+include BEDTOOLS_GENOMECOV from '../main.nf' params(params)
 
 // Define input channels
 ch_input = Channel.fromPath('./input_data/JK2067_downsampled_s0.1.bam')
@@ -13,6 +13,6 @@ chrom_sizes = Channel.fromPath('./input_data/genome.sizes')
 
 // Run the workflow
 workflow {
-    GENOMECOV(ch_input, chrom_sizes, params.genomecov_args)
+    BEDTOOLS_GENOMECOV(ch_input, chrom_sizes, params.bedtools_genomecov_args)
     // .check_output()
 }