millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-21 18:58:16 +00:00
Code Issues Releases Packages Activity

fix test

Browse source
This commit is contained in:
Ramprasad Neethiraj 2022-06-08 14:48:16 +02:00
parent ea4dc866e0
commit c079ee2025
2 changed files with 5 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
modules/bcftools/roh/meta.yml
View file

@ -23,6 +23,9 @@ input:
- af_file:
type: file
description: "Read allele frequencies from a tab-delimited file containing the columns: CHROM\tPOS\tREF,ALT\tAF."
- af_file_tbi:
type: file
description: "tbi index of af_file."
- genetic_map:
type: file
description: "Genetic map in the format required also by IMPUTE2."

4
tests/modules/bcftools/roh/main.nf
View file

@ -10,7 +10,7 @@ workflow test_bcftools_roh {
file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)]
af_file = []
af_file = [[],[]]
gen_map = []
regions = []
targets = []
@ -25,7 +25,7 @@ workflow test_bcftools_roh_stub {
file(params.test_data['sarscov2']['illumina']['test_vcf_gz'], checkIfExists: true),
file(params.test_data['sarscov2']['illumina']['test_vcf_gz_tbi'], checkIfExists: true)]
af_file = []
af_file = [[],[]]
gen_map = []
regions = []
targets = []