millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-21 10:48:18 +00:00
Code Issues Releases Packages Activity

cat/fastq: update conditional (#2085)

Browse source 
update conditional
This commit is contained in:
Matthias De Smet 2022-09-20 14:46:01 +02:00 committed by GitHub
parent d8ba32c6b5
commit c13f2274fb
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

4
modules/cat/fastq/main.nf
View file

@ -22,7 +22,7 @@ process CAT_FASTQ {
def prefix = task.ext.prefix ?: "${meta.id}"
def readList = reads.collect{ it.toString() }
if (meta.single_end) {
if (readList.size > 1) {
if (readList.size >= 1) {
"""
cat ${readList.join(' ')} > ${prefix}.merged.fastq.gz
@ -33,7 +33,7 @@ process CAT_FASTQ {
"""
}
} else {
if (readList.size > 2) {
if (readList.size >= 2) {
def read1 = []
def read2 = []
readList.eachWithIndex{ v, ix -> ( ix & 1 ? read2 : read1 ) << v }