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test(fastqc): Use -entry to speed up tests

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`--wt, --workflow-threads` is now an option and can be used to run tests
simultaneously.
This commit is contained in:
Edmund Miller 2020-11-16 13:41:59 -06:00
parent a4544a11ad
commit c264c66a49
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GPG key ID: BD387FF7BC10AA9D
2 changed files with 8 additions and 7 deletions
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5
software/fastqc/test/main.nf
View file

@ -29,8 +29,3 @@ workflow test_paired_end {
FASTQC_PE ( input ) FASTQC_PE ( input )
} }
workflow {
test_single_end()
test_paired_end()
}

10
tests/test_fastqc.yml
View file

@ -1,11 +1,17 @@
- name: Run fastqc test workflow - name: Run fastqc single-end test workflow
command: nextflow run ./software/fastqc/test/ -profile docker command: nextflow run ./software/fastqc/test/ -profile docker -entry test_single_end
tags: tags:
- fastqc - fastqc
files: files:
- path: output/test_single_end/test_fastqc.html - path: output/test_single_end/test_fastqc.html
md5sum: d4d3d600c8dc4024c05b531c2920659a md5sum: d4d3d600c8dc4024c05b531c2920659a
- path: output/test_single_end/test_fastqc.zip - path: output/test_single_end/test_fastqc.zip
- name: Run fastqc paired-end test workflow
command: nextflow run ./software/fastqc/test/ -profile docker -entry test_paired_end
tags:
- fastqc
files:
- path: output/test_paired_end/test_1_fastqc.html - path: output/test_paired_end/test_1_fastqc.html
md5sum: fb13b04d87d4f8b5078c0d92f6ef2d06 md5sum: fb13b04d87d4f8b5078c0d92f6ef2d06
- path: output/test_paired_end/test_2_fastqc.html - path: output/test_paired_end/test_2_fastqc.html