diff --git a/modules/fgbio/callmolecularconsensusreads/main.nf b/modules/fgbio/callmolecularconsensusreads/main.nf index 347dc269..fc9b1b1b 100644 --- a/modules/fgbio/callmolecularconsensusreads/main.nf +++ b/modules/fgbio/callmolecularconsensusreads/main.nf @@ -2,10 +2,10 @@ process FGBIO_CALLMOLECULARCONSENSUSREADS { tag "$meta.id" label 'process_medium' - conda (params.enable_conda ? "bioconda::fgbio=1.3.0" : null) + conda (params.enable_conda ? "bioconda::fgbio=2.0.2" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/fgbio:1.3.0--0' : - 'quay.io/biocontainers/fgbio:1.3.0--0' }" + 'https://depot.galaxyproject.org/singularity/fgbio:2.0.2--hdfd78af_0' : + 'quay.io/biocontainers/fgbio:2.0.2--hdfd78af_0' }" input: tuple val(meta), path(bam) diff --git a/modules/fgbio/groupreadsbyumi/main.nf b/modules/fgbio/groupreadsbyumi/main.nf index 31250d23..7c09ab7c 100644 --- a/modules/fgbio/groupreadsbyumi/main.nf +++ b/modules/fgbio/groupreadsbyumi/main.nf @@ -2,10 +2,10 @@ process FGBIO_GROUPREADSBYUMI { tag "$meta.id" label 'process_low' - conda (params.enable_conda ? "bioconda::fgbio=1.4.0" : null) + conda (params.enable_conda ? "bioconda::fgbio=2.0.2" : null) container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'https://depot.galaxyproject.org/singularity/fgbio:1.4.0--hdfd78af_0' : - 'quay.io/biocontainers/fgbio:1.4.0--hdfd78af_0' }" + 'https://depot.galaxyproject.org/singularity/fgbio:2.0.2--hdfd78af_0' : + 'quay.io/biocontainers/fgbio:2.0.2--hdfd78af_0' }" input: tuple val(meta), path(taggedbam) diff --git a/tests/modules/fgbio/callmolecularconsensusreads/test.yml b/tests/modules/fgbio/callmolecularconsensusreads/test.yml index 5e26cd01..61ddb382 100644 --- a/tests/modules/fgbio/callmolecularconsensusreads/test.yml +++ b/tests/modules/fgbio/callmolecularconsensusreads/test.yml @@ -5,6 +5,6 @@ - fgbio/callmolecularconsensusreads files: - path: output/fgbio/test_molreads.bam - md5sum: 7010bcdc037c36af13dbc370c06c76d3 + md5sum: 6ae57429e3218f5eba9555d597b7c60f - path: output/fgbio/test_out.bam md5sum: d84e28fecc90c0752c543e934f10aa31 diff --git a/tests/modules/fgbio/groupreadsbyumi/test.yml b/tests/modules/fgbio/groupreadsbyumi/test.yml index c1cfd4f0..529a07e5 100644 --- a/tests/modules/fgbio/groupreadsbyumi/test.yml +++ b/tests/modules/fgbio/groupreadsbyumi/test.yml @@ -5,6 +5,6 @@ - fgbio/groupreadsbyumi files: - path: output/fgbio/test_umi-grouped.bam - md5sum: f1e53fc845fd99a3da172eb8063dff0b + md5sum: c7a9aee0b9b277c85d6a112d3021082d - path: output/fgbio/test_umi_histogram.txt - md5sum: d17fd167b2a765d46e4b01bf08ece01b + md5sum: f2f29523bb7016e1a78fe634466cbfba