millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 02:58:17 +00:00
Code Issues Releases Packages Activity

revert wgsmetrics'

Browse source
This commit is contained in:
Matthias De Smet 2022-05-22 06:44:05 +02:00
parent 4da143ce62
commit c390385cf5
1 changed files with 1 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
modules/picard/collectwgsmetrics/main.nf
View file

@ -21,7 +21,6 @@ process PICARD_COLLECTWGSMETRICS {
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}"
def reference = fasta ? "--REFERENCE_SEQUENCE ${fasta}" : ""
def avail_mem = 3
if (!task.memory) {
log.info '[Picard CollectWgsMetrics] Available memory not known - defaulting to 3GB. Specify process memory requirements to change this.'
@ -35,7 +34,7 @@ process PICARD_COLLECTWGSMETRICS {
$args \\
--INPUT $bam \\
--OUTPUT ${prefix}.CollectWgsMetrics.coverage_metrics \\
$reference
--REFERENCE_SEQUENCE ${fasta}
cat <<-END_VERSIONS > versions.yml