millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-31 03:32:10 -05:00
Code Issues Releases Packages Activity

separate gvcf and vcf in output channels (#1371)

Browse source 
* separate gvcf and vcf in output channels

* regex not working, just using prefix now
This commit is contained in:
FriederikeHanssen 2022-03-03 11:54:07 +01:00 committed by GitHub
parent 0816df1e8b
commit c450b08a75
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
modules/deepvariant/main.nf
View file

@ -17,8 +17,8 @@ process DEEPVARIANT {
path(fai)
output:
tuple val(meta), path("*.vcf.gz") , emit: vcf
tuple val(meta), path("*g.vcf.gz"), emit: gvcf
tuple val(meta), path("${prefix}.vcf.gz") , emit: vcf
tuple val(meta), path("${prefix}.g.vcf.gz"), emit: gvcf
path "versions.yml" , emit: versions
when:
@ -26,7 +26,7 @@ process DEEPVARIANT {
script:
def args = task.ext.args ?: ''
def prefix = task.ext.prefix ?: "${meta.id}"
prefix = task.ext.prefix ?: "${meta.id}"
def regions = intervals ? "--regions ${intervals}" : ""
"""