diff --git a/modules/cnvkit/reference/main.nf b/modules/cnvkit/reference/main.nf index 1f0b20d8..71d9ed28 100644 --- a/modules/cnvkit/reference/main.nf +++ b/modules/cnvkit/reference/main.nf @@ -1,5 +1,5 @@ process CNVKIT_REFERENCE { - tag "$reference" + tag "$fasta" label 'process_low' conda (params.enable_conda ? "bioconda::cnvkit=0.9.9" : null) @@ -8,20 +8,19 @@ process CNVKIT_REFERENCE { 'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }" input: - path fasta - path targets - path antitargets + path fasta + path targets + path antitargets output: - path("*.cnn") , emit: cnn - path "versions.yml" , emit: versions + path "*.cnn" , emit: cnn + path "versions.yml", emit: versions when: task.ext.when == null || task.ext.when script: def args = task.ext.args ?: '' - """ cnvkit.py \\ reference \\