From c77ea13d355abcd11b7c5c94ee7078b77db670a9 Mon Sep 17 00:00:00 2001
From: Phil Ewels <phil.ewels@scilifelab.se>
Date: Fri, 6 Dec 2019 10:15:49 +0100
Subject: [PATCH] Fixed FastQC tests with submodule

---
 tools/fastqc/test/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/tools/fastqc/test/main.nf b/tools/fastqc/test/main.nf
index f24a81da..c349bbe8 100644
--- a/tools/fastqc/test/main.nf
+++ b/tools/fastqc/test/main.nf
@@ -12,7 +12,7 @@ readPaths = [
 ]
 Channel
   .from(readPaths)
-  .map { row -> [ row[0], [row[1][0]]] }
+  .map { row -> [ row[0], [ file(row[1][0]) ] ] }
   .set { ch_read_files }
 
 // Run the workflow