From c8877835c288eb32b2ad1810d38a78e83e791f3d Mon Sep 17 00:00:00 2001 From: "Maxime U. Garcia" Date: Fri, 16 Jul 2021 11:24:29 +0200 Subject: [PATCH] fix: update to gatk4.2.0.0 (#579) --- modules/gatk4/createsequencedictionary/main.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/gatk4/createsequencedictionary/main.nf b/modules/gatk4/createsequencedictionary/main.nf index 3cf5543a..0276e8b2 100644 --- a/modules/gatk4/createsequencedictionary/main.nf +++ b/modules/gatk4/createsequencedictionary/main.nf @@ -11,11 +11,11 @@ process GATK4_CREATESEQUENCEDICTIONARY { mode: params.publish_dir_mode, saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:[:], publish_by_meta:[]) } - conda (params.enable_conda ? "bioconda::gatk4=4.1.9.0" : null) + conda (params.enable_conda ? "bioconda::gatk4=4.2.0.0" : null) if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { - container "https://depot.galaxyproject.org/singularity/gatk4:4.1.9.0--py39_0" + container "https://depot.galaxyproject.org/singularity/gatk4:4.2.0.0--0" } else { - container "quay.io/biocontainers/gatk4:4.1.9.0--py39_0" + container "quay.io/biocontainers/gatk4:4.2.0.0--0" } input: