millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 02:58:17 +00:00
Code Issues Releases Packages Activity

restore samtools cmd to defaults

Browse source
This commit is contained in:
Matthias De Smet 2022-05-11 16:17:30 +02:00 committed by GitHub
parent bcd7fe55b1
commit c8d3de2ad9
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
modules/bowtie2/align/main.nf
View file

@ -36,7 +36,7 @@ process BOWTIE2_ALIGN {
reads_args = "-1 ${reads[0]} -2 ${reads[1]}"
}
def samtools_command = "samtools view -@ $task.cpus --fast --with-header ${args2} > ${prefix}.bam"
def samtools_command = "samtools view -@ $task.cpus --bam --with-header ${args2} > ${prefix}.bam"
"""