From c8f30720a1871e9d282477cf1a1e4612c4316680 Mon Sep 17 00:00:00 2001
From: sruthipsuresh <58604926+sruthipsuresh@users.noreply.github.com>
Date: Fri, 30 Oct 2020 08:53:17 -0500
Subject: [PATCH] Created meta file for the fixbedcoordinates module.

---
 software/bedtools/fixbedcoordinates/meta.yml | 55 ++++++++++++++++++++
 1 file changed, 55 insertions(+)
 create mode 100644 software/bedtools/fixbedcoordinates/meta.yml

diff --git a/software/bedtools/fixbedcoordinates/meta.yml b/software/bedtools/fixbedcoordinates/meta.yml
new file mode 100644
index 00000000..ad6e0cac
--- /dev/null
+++ b/software/bedtools/fixbedcoordinates/meta.yml
@@ -0,0 +1,55 @@
+name: bedtools_fixbedcoordinates
+description: Removes chrXYZ_random entries in hg18, fixes alignments if start is after the end and
+sorts the entries
+
+keywords:
+    - bed
+    - length
+    - sort
+
+    tools:
+    - bedtools:
+        description: |
+            A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.
+        documentation: https://bedtools.readthedocs.io/en/latest/
+
+params:
+    - outdir:
+        type: string
+        description: |
+            The pipeline's output directory. By default, the module will
+            output files into `$params.outdir/<SOFTWARE>`
+    - publish_dir_mode:
+        type: string
+        description: |
+            Value for the Nextflow `publishDir` mode parameter.
+            Available: symlink, rellink, link, copy, copyNoFollow, move.
+    - enable_conda:
+        type: boolean
+        description: |
+            Run the module with Conda using the software specified
+            via the `conda` directive
+input:
+    - meta:
+        type: map
+        description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
+    - bed:
+        type: file
+        description: List of bed files
+        pattern: "*.{bed}"
+output:
+    - meta:
+        type: map
+        description: |
+            Groovy Map containing sample information
+            e.g. [ id:'test', single_end:false ]
+    - bed:
+        type: file
+        description: Edited bed file
+        pattern: "*.{bed}"
+    - version:
+        type: file
+        description: File containing software version
+        pattern: "*.{version.txt}"