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Merge branch 'master' into kat_hist

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Mahesh Binzer-Panchal 2022-05-24 13:57:45 +02:00 committed by GitHub
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1 changed files with 6 additions and 7 deletions
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modules/cnvkit/reference/main.nf
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@ -1,5 +1,5 @@
process CNVKIT_REFERENCE { process CNVKIT_REFERENCE {
tag "$reference" tag "$fasta"
label 'process_low' label 'process_low'
conda (params.enable_conda ? "bioconda::cnvkit=0.9.9" : null) conda (params.enable_conda ? "bioconda::cnvkit=0.9.9" : null)
@ -8,20 +8,19 @@ process CNVKIT_REFERENCE {
'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }" 'quay.io/biocontainers/cnvkit:0.9.9--pyhdfd78af_0' }"
input: input:
path fasta path fasta
path targets path targets
path antitargets path antitargets
output: output:
path("*.cnn") , emit: cnn path "*.cnn" , emit: cnn
path "versions.yml" , emit: versions path "versions.yml", emit: versions
when: when:
task.ext.when == null || task.ext.when task.ext.when == null || task.ext.when
script: script:
def args = task.ext.args ?: '' def args = task.ext.args ?: ''
""" """
cnvkit.py \\ cnvkit.py \\
reference \\ reference \\