update meta

tools/cutadapt/meta.yml

@@ -1,40 +1,36 @@
 name: Cutadapt
 description: cutadapt removes adapter sequences from high-throughput sequencing reads
 keywords:
-  - Quality Control
-  - QC
-  - Adapters
+    - Quality Control
+    - QC
+    - Adapters
 tools:
-  - fastqc:
-      description: |
-        Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence
-        from your high-throughput sequencing reads.
-
-        Cleaning your data in this way is often required: Reads from small-RNA sequencing contain the 3’
-        sequencing adapter because the read is longer than the molecule that is sequenced. Amplicon reads 
-        start with a primer sequence. Poly-A tails are useful for pulling out RNA from your sample, but 
-        often you don’t want them to be in your reads.
-      homepage: https://cutadapt.readthedocs.io/en/stable/
-      documentation: https://cutadapt.readthedocs.io/en/stable/
+    - fastqc:
+        description: |
+            Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence
+            from your high-throughput sequencing reads.
+            
+            Cleaning your data in this way is often required: Reads from small-RNA sequencing contain the 3’
+            sequencing adapter because the read is longer than the molecule that is sequenced. Amplicon reads 
+            start with a primer sequence. Poly-A tails are useful for pulling out RNA from your sample, but 
+            often you don’t want them to be in your reads.
+        homepage: https://cutadapt.readthedocs.io/en/stable/
+        documentation: https://cutadapt.readthedocs.io/en/stable/
 input:
-  - - sample_id:
-        type: string
-        description: Sample identifier
-    - input_forward_fq:
-        type: file
-        description: Input FastQ forward read file of the pair
-    - input_reverse_fq:
-        type: file
-        description: Input FastQ reverse read file of the pair
+    -
+        - sample_id:
+            type: string
+            description: Sample identifier
+        - reads:
+            type: file
+            description: Input FastQ file, or pair of files
 output:
-  - - sample_id:
-        type: string
-        description: Sample identifier
-    - output_forward_fq:
-        type: file
-        description: Output FastQ forward read file of the pair
-    - output_reverse_fq:
-        type: file
-        description: Output FastQ reverse read file of the pair
+    -
+        - sample_id:
+            type: string
+            description: Sample identifier
+        - reads:
+            type: file
+            description: trimmed FastQ file, or pair of files
 authors:
-  - @piotr-faba-ardigen
+    - @piotr-faba-ardigen