From c9cfdd31f38bac9e2f8365a5663d2901bfc78187 Mon Sep 17 00:00:00 2001 From: drpatelh Date: Mon, 8 Feb 2021 00:57:06 +0000 Subject: [PATCH] Fix barfing linters --- .github/filters.yml | 2 +- README.md | 3 +-- software/TOOL/SUBTOOL/meta.yml | 2 +- 3 files changed, 3 insertions(+), 4 deletions(-) diff --git a/.github/filters.yml b/.github/filters.yml index 188ba85c..279eaf50 100644 --- a/.github/filters.yml +++ b/.github/filters.yml @@ -171,4 +171,4 @@ trimgalore: ucsc_bedgraphtobigwig: - software/ucsc/bedgraphtobigwig/** - - tests/software/ucsc/bedgraphtobigwig/** \ No newline at end of file + - tests/software/ucsc/bedgraphtobigwig/** diff --git a/README.md b/README.md index be1c262f..f5acb840 100644 --- a/README.md +++ b/README.md @@ -12,7 +12,6 @@ [![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core) > THIS REPOSITORY IS UNDER ACTIVE DEVELOPMENT. SYNTAX, ORGANISATION AND LAYOUT MAY CHANGE WITHOUT NOTICE! - > PLEASE BE KIND TO OUR CODE REVIEWERS AND SUBMIT ONE PULL REQUEST PER MODULE :) A repository for hosting [Nextflow DSL2](https://www.nextflow.io/docs/latest/dsl2.html) module files containing tool-specific process definitions and their associated documentation. @@ -255,7 +254,7 @@ In order to test that each module added to `nf-core/modules` is actually working #### Pytest workflow -- Every module MUST have a test workflow utilising test data added to the appropriate directory e.g. [`tests/software/fastqc/main.nf`](tests/software/fastqc/main.nf) +- Every module MUST have a test workflow utilising test data added to the appropriate directory e.g. [`tests/software/fastqc/main.nf`](tests/software/fastqc/main.nf) - Any outputs produced by the test workflow MUST be included in the [pytest-workflow](https://pytest-workflow.readthedocs.io/en/stable) for that tool e.g. [`tests/software/fastqc/test.yml`](tests/software/fastqc/test.yml). `md5sum` checks are the preferable choice of test to determine file changes, however, this may not be possible for all outputs generated by some tools e.g. if they include time stamps or command-related headers. Please do your best to avoid just checking for the file being present e.g. it may still be possible to check that the file contains the appropriate text snippets. diff --git a/software/TOOL/SUBTOOL/meta.yml b/software/TOOL/SUBTOOL/meta.yml index 93cad2b9..96135c64 100644 --- a/software/TOOL/SUBTOOL/meta.yml +++ b/software/TOOL/SUBTOOL/meta.yml @@ -69,4 +69,4 @@ output: pattern: "*.{version.txt}" ## TODO nf-core: Add your GitHub username below authors: - - "@your_github_username" \ No newline at end of file + - "@your_github_username"