diff --git a/tools/umi_tools/test/main.nf b/tools/umi_tools/test/main.nf index e0bf3cc2..6e40d5e1 100644 --- a/tools/umi_tools/test/main.nf +++ b/tools/umi_tools/test/main.nf @@ -11,7 +11,7 @@ log.info ("Starting tests for umi_tools dedup...") --------------------------------------------------------------------------------------*/ params.umitools_dedup_args = '--umi-separator=":"' -params.verbose = true +params.verbose = false /*------------------------------------------------------------------------------------*/ /* Module inclusions @@ -46,13 +46,10 @@ Channel workflow { // Run dedup umitools_dedup ( ch_bam ) - - // Collect file names and view output - umitools_dedup.out.dedupBam | view } workflow.onComplete { - def proc = "$baseDir/verify-checksum.sh $baseDir/../../../results/umitools/dedup/*.bai $baseDir/output/*.bai".execute() + def proc = "$baseDir/verify-checksum.sh $baseDir/../../../results/umitools/dedup/*.bam $baseDir/output/*.bam".execute() def b = new StringBuffer() proc.consumeProcessErrorStream(b) diff --git a/tools/umi_tools/test/output/sample1.dedup.bam b/tools/umi_tools/test/output/sample1.dedup.bam deleted file mode 100644 index 291d51e5..00000000 Binary files a/tools/umi_tools/test/output/sample1.dedup.bam and /dev/null differ diff --git a/tools/umi_tools/test/output/sample1.dedup.bam.bai b/tools/umi_tools/test/output/sample1.dedup.bam.bai deleted file mode 100644 index d21b81dd..00000000 Binary files a/tools/umi_tools/test/output/sample1.dedup.bam.bai and /dev/null differ diff --git a/tools/umi_tools/test/output/sample2.dedup.bam b/tools/umi_tools/test/output/sample2.dedup.bam deleted file mode 100644 index 6137ff3e..00000000 Binary files a/tools/umi_tools/test/output/sample2.dedup.bam and /dev/null differ diff --git a/tools/umi_tools/test/output/sample2.dedup.bam.bai b/tools/umi_tools/test/output/sample2.dedup.bam.bai deleted file mode 100644 index ffaf583a..00000000 Binary files a/tools/umi_tools/test/output/sample2.dedup.bam.bai and /dev/null differ diff --git a/tools/umi_tools/test/output/sample3.dedup.bam b/tools/umi_tools/test/output/sample3.dedup.bam deleted file mode 100644 index e81876b7..00000000 Binary files a/tools/umi_tools/test/output/sample3.dedup.bam and /dev/null differ diff --git a/tools/umi_tools/test/output/sample3.dedup.bam.bai b/tools/umi_tools/test/output/sample3.dedup.bam.bai deleted file mode 100644 index beddf70d..00000000 Binary files a/tools/umi_tools/test/output/sample3.dedup.bam.bai and /dev/null differ diff --git a/tools/umi_tools/test/output/sample4.dedup.bam b/tools/umi_tools/test/output/sample4.dedup.bam deleted file mode 100644 index 7c52fd9f..00000000 Binary files a/tools/umi_tools/test/output/sample4.dedup.bam and /dev/null differ diff --git a/tools/umi_tools/test/output/sample4.dedup.bam.bai b/tools/umi_tools/test/output/sample4.dedup.bam.bai deleted file mode 100644 index d87fba95..00000000 Binary files a/tools/umi_tools/test/output/sample4.dedup.bam.bai and /dev/null differ diff --git a/tools/umi_tools/test/output/sample5.dedup.bam b/tools/umi_tools/test/output/sample5.dedup.bam deleted file mode 100644 index ffa193b8..00000000 Binary files a/tools/umi_tools/test/output/sample5.dedup.bam and /dev/null differ diff --git a/tools/umi_tools/test/output/sample5.dedup.bam.bai b/tools/umi_tools/test/output/sample5.dedup.bam.bai deleted file mode 100644 index 1cdf859d..00000000 Binary files a/tools/umi_tools/test/output/sample5.dedup.bam.bai and /dev/null differ diff --git a/tools/umi_tools/test/output/sample6.dedup.bam b/tools/umi_tools/test/output/sample6.dedup.bam deleted file mode 100644 index f458638c..00000000 Binary files a/tools/umi_tools/test/output/sample6.dedup.bam and /dev/null differ diff --git a/tools/umi_tools/test/output/sample6.dedup.bam.bai b/tools/umi_tools/test/output/sample6.dedup.bam.bai deleted file mode 100644 index cae2bc7f..00000000 Binary files a/tools/umi_tools/test/output/sample6.dedup.bam.bai and /dev/null differ