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luslab-umitools | Changed all tabs to 4-space

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This commit is contained in:
Chris Cheshire 2020-06-26 08:23:16 +01:00
parent a905c05147
commit cb58bea33f
1 changed files with 19 additions and 19 deletions
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38
tools/umi_tools/test/main.nf
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@ -25,35 +25,35 @@ include umitools_dedup from '../main.nf'
// Meta data // Meta data
testMetaDataBam = [ testMetaDataBam = [
['sample1', "$baseDir/input/sample1.bam"], ['sample1', "$baseDir/input/sample1.bam"],
['sample2', "$baseDir/input/sample2.bam"], ['sample2', "$baseDir/input/sample2.bam"],
['sample3', "$baseDir/input/sample3.bam"], ['sample3', "$baseDir/input/sample3.bam"],
['sample4', "$baseDir/input/sample4.bam"], ['sample4', "$baseDir/input/sample4.bam"],
['sample5', "$baseDir/input/sample5.bam"], ['sample5', "$baseDir/input/sample5.bam"],
['sample6', "$baseDir/input/sample6.bam"] ['sample6', "$baseDir/input/sample6.bam"]
] ]
testMetaDataBai = [ testMetaDataBai = [
['sample1', "$baseDir/input/sample1.bai"], ['sample1', "$baseDir/input/sample1.bai"],
['sample2', "$baseDir/input/sample2.bai"], ['sample2', "$baseDir/input/sample2.bai"],
['sample3', "$baseDir/input/sample3.bai"], ['sample3', "$baseDir/input/sample3.bai"],
['sample4', "$baseDir/input/sample4.bai"], ['sample4', "$baseDir/input/sample4.bai"],
['sample5', "$baseDir/input/sample5.bai"], ['sample5', "$baseDir/input/sample5.bai"],
['sample6', "$baseDir/input/sample6.bai"] ['sample6', "$baseDir/input/sample6.bai"]
] ]
//Bam input channel //Bam input channel
Channel Channel
.from(testMetaDataBam) .from(testMetaDataBam)
.map { row -> [ row[0], file(row[1], checkIfExists: true) ]} .map { row -> [ row[0], file(row[1], checkIfExists: true) ]}
.set {ch_test_meta_bam} .set {ch_test_meta_bam}
//BamBai input channel //BamBai input channel
Channel Channel
.from(testMetaDataBai) .from(testMetaDataBai)
.map { row -> [ row[0], file(row[1], checkIfExists: true) ] } .map { row -> [ row[0], file(row[1], checkIfExists: true) ] }
.join(ch_test_meta_bam) .join(ch_test_meta_bam)
.set {ch_test_meta_bambai} .set {ch_test_meta_bambai}
/*------------------------------------------------------------------------------------*/ /*------------------------------------------------------------------------------------*/
/* Run tests /* Run tests