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luslab-umitools | Changed all tabs to 4-space

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This commit is contained in:
Chris Cheshire 2020-06-26 08:23:16 +01:00
parent a905c05147
commit cb58bea33f
1 changed files with 19 additions and 19 deletions
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38
tools/umi_tools/test/main.nf
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@ -25,35 +25,35 @@ include umitools_dedup from '../main.nf'
// Meta data
testMetaDataBam = [
['sample1', "$baseDir/input/sample1.bam"],
['sample2', "$baseDir/input/sample2.bam"],
['sample3', "$baseDir/input/sample3.bam"],
['sample4', "$baseDir/input/sample4.bam"],
['sample5', "$baseDir/input/sample5.bam"],
['sample6', "$baseDir/input/sample6.bam"]
['sample1', "$baseDir/input/sample1.bam"],
['sample2', "$baseDir/input/sample2.bam"],
['sample3', "$baseDir/input/sample3.bam"],
['sample4', "$baseDir/input/sample4.bam"],
['sample5', "$baseDir/input/sample5.bam"],
['sample6', "$baseDir/input/sample6.bam"]
]
testMetaDataBai = [
['sample1', "$baseDir/input/sample1.bai"],
['sample2', "$baseDir/input/sample2.bai"],
['sample3', "$baseDir/input/sample3.bai"],
['sample4', "$baseDir/input/sample4.bai"],
['sample5', "$baseDir/input/sample5.bai"],
['sample6', "$baseDir/input/sample6.bai"]
['sample1', "$baseDir/input/sample1.bai"],
['sample2', "$baseDir/input/sample2.bai"],
['sample3', "$baseDir/input/sample3.bai"],
['sample4', "$baseDir/input/sample4.bai"],
['sample5', "$baseDir/input/sample5.bai"],
['sample6', "$baseDir/input/sample6.bai"]
]
//Bam input channel
Channel
.from(testMetaDataBam)
.map { row -> [ row[0], file(row[1], checkIfExists: true) ]}
.set {ch_test_meta_bam}
.from(testMetaDataBam)
.map { row -> [ row[0], file(row[1], checkIfExists: true) ]}
.set {ch_test_meta_bam}
//BamBai input channel
Channel
.from(testMetaDataBai)
.map { row -> [ row[0], file(row[1], checkIfExists: true) ] }
.join(ch_test_meta_bam)
.set {ch_test_meta_bambai}
.from(testMetaDataBai)
.map { row -> [ row[0], file(row[1], checkIfExists: true) ] }
.join(ch_test_meta_bam)
.set {ch_test_meta_bambai}
/*------------------------------------------------------------------------------------*/
/* Run tests