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fix tests
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3a2de0cf6f
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3 changed files with 1 additions and 16 deletions
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@ -5,7 +5,6 @@
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- picard
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files:
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- path: output/picard/test.CollectHsMetrics.coverage_metrics
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- name: picard collecthsmetrics test_picard_collecthsmetrics_nofasta
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command: nextflow run ./tests/modules/picard/collecthsmetrics -entry test_picard_collecthsmetrics_nofasta -c ./tests/config/nextflow.config -c ./tests/modules/picard/collecthsmetrics/nextflow.config
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@ -14,4 +13,3 @@
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- picard
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files:
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- path: output/picard/test.CollectHsMetrics.coverage_metrics
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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@ -32,22 +32,12 @@
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- picard/collectmultiplemetrics
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files:
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- path: output/picard/test.CollectMultipleMetrics.alignment_summary_metrics
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle.pdf
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.base_distribution_by_cycle_metrics
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.insert_size_histogram.pdf
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.insert_size_metrics
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.quality_by_cycle.pdf
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.quality_by_cycle_metrics
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.quality_distribution.pdf
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.quality_distribution_metrics
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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- path: output/picard/test.CollectMultipleMetrics.read_length_histogram.pdf
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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@ -5,7 +5,4 @@
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- picard
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files:
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- path: output/picard/test.CollectWgsMetrics.coverage_metrics
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contains:
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- "GENOME_TERRITORY"
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- "29829"
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- "17554"
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contains: '[ # TODO nf-core: file md5sum was variable, please replace this text with a string found in the file instead ]'
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