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Pydamage analyzer update (#863)

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* Specify more guidelines on input channels

* Linting

* Updates based on code review

* Update README.md

* Fix broken sentence

* feat: add megahit module, currently decompressed output

* Update main.nf

* Update tests/modules/megahit/test.yml

Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* feat: compress all outputs, remove md5sums due to gz stochasicity

* fix: wrong conda channel for pigz

* fix: broken singleend tests and update meta.yml

* Missed one

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* fix: pigz formatting

* Apply suggestions from code review

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Apply suggestions from code review

* Update md5sum due to test-dataset update

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
Co-authored-by: Maxime Borry <maxibor@users.noreply.github.com>
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James A. Fellows Yates 2021-10-18 15:24:49 +02:00 committed by GitHub
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tests/modules/pydamage/analyze/test.yml
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@ -5,4 +5,4 @@
- pydamage/analyze
files:
- path: output/pydamage/pydamage_results/pydamage_results.csv
md5sum: 6847e0d5aa6dba85bbd2dd509772b7a0
md5sum: 37ee6b4dee6890fd2ec8550337f21ac9