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Update antismashlite module main.nf

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jasmezz 2022-04-26 17:15:41 +02:00
parent 1acde9a7a1
commit cc05006dbb
1 changed files with 22 additions and 22 deletions
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tests/modules/antismash/antismashlite/main.nf
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@ -10,32 +10,32 @@ include { ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES } from '../../../modules/anti
include { ANTISMASH_ANTISMASHLITE } from '../../../../modules/antismash/antismashlite/main.nf' include { ANTISMASH_ANTISMASHLITE } from '../../../../modules/antismash/antismashlite/main.nf'
include { PROKKA } from '../../../modules/prokka/main.nf' include { PROKKA } from '../../../modules/prokka/main.nf'
// workflow test_antismashlite { workflow test_antismashlite {
// input = [ input = [
// [ id:'test' ], // meta map [ id:'test' ], // meta map
// file(params.test_data['bacteroides_fragilis']['genome']['genome_gbff_gz'], checkIfExists: true) ] file(params.test_data['bacteroides_fragilis']['genome']['genome_gbff_gz'], checkIfExists: true) ]
// input_antismash_db1 = [ input_antismash_db1 = [
// [], [],
// file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/css.tar.gz', checkIfExists: true) file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/css.tar.gz', checkIfExists: true)
// ] ]
// input_antismash_db2 = [ input_antismash_db2 = [
// [], [],
// file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/detection.tar.gz', checkIfExists: true) file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/detection.tar.gz', checkIfExists: true)
// ] ]
// input_antismash_db3 = [ input_antismash_db3 = [
// [], [],
// file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/modules.tar.gz', checkIfExists: true) file('https://github.com/nf-core/test-datasets/raw/modules/data/delete_me/antismash/modules.tar.gz', checkIfExists: true)
// ] ]
// UNTAR1 ( input_antismash_db1 ) UNTAR1 ( input_antismash_db1 )
// UNTAR2 ( input_antismash_db2 ) UNTAR2 ( input_antismash_db2 )
// UNTAR3 ( input_antismash_db3 ) UNTAR3 ( input_antismash_db3 )
// ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES ( UNTAR1.out.untar.map{ it[1] }, UNTAR2.out.untar.map{ it[1] }, UNTAR3.out.untar.map{ it[1] } ) ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES ( UNTAR1.out.untar.map{ it[1] }, UNTAR2.out.untar.map{ it[1] }, UNTAR3.out.untar.map{ it[1] } )
// ANTISMASH_ANTISMASHLITE ( input, ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES.out.database, UNTAR1.out.untar.map{ it[1] }, UNTAR2.out.untar.map{ it[1] }, UNTAR3.out.untar.map{ it[1] } ) ANTISMASH_ANTISMASHLITE ( input, ANTISMASH_ANTISMASHLITEDOWNLOADDATABASES.out.database, UNTAR1.out.untar.map{ it[1] }, UNTAR2.out.untar.map{ it[1] }, UNTAR3.out.untar.map{ it[1] } )
//} }
workflow test_prokka_antismashlite { workflow test_prokka_antismashlite {
input_gunzip = [ [ id:'test' ], // meta map input_gunzip = [ [ id:'test' ], // meta map