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luslab-umitools | Cleaned up sample file names

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This commit is contained in:
Chris Cheshire 2020-06-18 15:44:27 +01:00
parent 9092ae8c01
commit ceb1a6ef1a
13 changed files with 12 additions and 12 deletions
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tools/umi_tools/dedup/test/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample1.bai
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tools/umi_tools/dedup/test/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample1.bam
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tools/umi_tools/dedup/test/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample2.bai
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tools/umi_tools/dedup/test/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample2.bam
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tools/umi_tools/dedup/test/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample3.bai
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tools/umi_tools/dedup/test/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample3.bam
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tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample4.bai
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tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample4.bam
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tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample5.bai
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tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample5.bam
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tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample6.bai
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tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample6.bam
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tools/umi_tools/dedup/test/test.nf
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@ -16,21 +16,21 @@ include dedup from '../main.nf'
--------------------------------------------------------------------------------------*/ --------------------------------------------------------------------------------------*/
testMetaDataBam = [ testMetaDataBam = [
['Sample1', "$baseDir/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bam"], ['Sample1', "$baseDir/input/sample1.bam"],
['Sample2', "$baseDir/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bam"], ['Sample2', "$baseDir/input/sample2.bam"],
['Sample3', "$baseDir/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bam"], ['Sample3', "$baseDir/input/sample3.bam"],
['Sample4', "$baseDir/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bam"], ['Sample4', "$baseDir/input/sample4.bam"],
['Sample5', "$baseDir/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bam"], ['Sample5', "$baseDir/input/sample5.bam"],
['Sample6', "$baseDir/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bam"] ['Sample6', "$baseDir/input/sample6.bam"]
] ]
testMetaDataBai = [ testMetaDataBai = [
['Sample1', "$baseDir/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bai"], ['Sample1', "$baseDir/input/sample1.bai"],
['Sample2', "$baseDir/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bai"], ['Sample2', "$baseDir/input/sample2.bai"],
['Sample3', "$baseDir/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bai"], ['Sample3', "$baseDir/input/sample3.bai"],
['Sample4', "$baseDir/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bai"], ['Sample4', "$baseDir/input/sample4.bai"],
['Sample5', "$baseDir/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bai"], ['Sample5', "$baseDir/input/sample5.bai"],
['Sample6', "$baseDir/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bai"] ['Sample6', "$baseDir/input/sample6.bai"]
] ]
// Create channels of test data // Create channels of test data