millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2025-01-03 04:52:09 -05:00
Code Issues Releases Packages Activity

luslab-umitools | Cleaned up sample file names

Browse source
This commit is contained in:
Chris Cheshire 2020-06-18 15:44:27 +01:00
parent 9092ae8c01
commit ceb1a6ef1a
13 changed files with 12 additions and 12 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

0
tools/umi_tools/dedup/test/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample1.bai
View file

0
tools/umi_tools/dedup/test/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample1.bam
View file

0
tools/umi_tools/dedup/test/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample2.bai
View file

0
tools/umi_tools/dedup/test/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample2.bam
View file

0
tools/umi_tools/dedup/test/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample3.bai
View file

0
tools/umi_tools/dedup/test/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample3.bam
View file

0
tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample4.bai
View file

0
tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample4.bam
View file

0
tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample5.bai
View file

0
tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample5.bam
View file

0
tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bai → tools/umi_tools/dedup/test/input/sample6.bai
View file

0
tools/umi_tools/dedup/test/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bam → tools/umi_tools/dedup/test/input/sample6.bam
View file

24
tools/umi_tools/dedup/test/test.nf
View file

@ -16,21 +16,21 @@ include dedup from '../main.nf'
--------------------------------------------------------------------------------------*/
testMetaDataBam = [
['Sample1', "$baseDir/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bam"],
['Sample2', "$baseDir/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bam"],
['Sample3', "$baseDir/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bam"],
['Sample4', "$baseDir/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bam"],
['Sample5', "$baseDir/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bam"],
['Sample6', "$baseDir/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bam"]
['Sample1', "$baseDir/input/sample1.bam"],
['Sample2', "$baseDir/input/sample2.bam"],
['Sample3', "$baseDir/input/sample3.bam"],
['Sample4', "$baseDir/input/sample4.bam"],
['Sample5', "$baseDir/input/sample5.bam"],
['Sample6', "$baseDir/input/sample6.bam"]
]
testMetaDataBai = [
['Sample1', "$baseDir/input/prpf8_ctrl_rep1.Aligned.sortedByCoord.out.bai"],
['Sample2', "$baseDir/input/prpf8_ctrl_rep2.Aligned.sortedByCoord.out.bai"],
['Sample3', "$baseDir/input/prpf8_ctrl_rep4.Aligned.sortedByCoord.out.bai"],
['Sample4', "$baseDir/input/prpf8_eif4a3_rep1.Aligned.sortedByCoord.out.bai"],
['Sample5', "$baseDir/input/prpf8_eif4a3_rep2.Aligned.sortedByCoord.out.bai"],
['Sample6', "$baseDir/input/prpf8_eif4a3_rep4.Aligned.sortedByCoord.out.bai"]
['Sample1', "$baseDir/input/sample1.bai"],
['Sample2', "$baseDir/input/sample2.bai"],
['Sample3', "$baseDir/input/sample3.bai"],
['Sample4', "$baseDir/input/sample4.bai"],
['Sample5', "$baseDir/input/sample5.bai"],
['Sample6', "$baseDir/input/sample6.bai"]
]
// Create channels of test data