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Update Dockerfile

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Alexander Peltzer 2022-06-10 10:56:13 +02:00 committed by GitHub
parent 61d87bb2bc
commit cfcd93f3e7
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1 changed files with 2 additions and 2 deletions
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modules/cellranger/mkfastq/Dockerfile
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@ -1,4 +1,4 @@
# Dockerfile to create container with Cell Ranger v6.1.2 and bcl2fastq v2.20.0 # Dockerfile to create container with Cell Ranger v7.0.0 and bcl2fastq v2.20.0
# Push to nfcore/cellrangermkfastq:<VER> # Push to nfcore/cellrangermkfastq:<VER>
FROM continuumio/miniconda3:4.8.2 FROM continuumio/miniconda3:4.8.2
@ -17,7 +17,7 @@ RUN apt-get update --allow-releaseinfo-change \
# Copy pre-downloaded bcl2fastq2 and cellranger file # Copy pre-downloaded bcl2fastq2 and cellranger file
ENV BCL2FASTQ2_VER=v2-20-0-linux-x86-64 \ ENV BCL2FASTQ2_VER=v2-20-0-linux-x86-64 \
CELLRANGER_VER=6.1.2 CELLRANGER_VER=7.0.0
COPY bcl2fastq2-$BCL2FASTQ2_VER.zip /tmp/bcl2fastq2-$BCL2FASTQ2_VER.zip COPY bcl2fastq2-$BCL2FASTQ2_VER.zip /tmp/bcl2fastq2-$BCL2FASTQ2_VER.zip
COPY cellranger-$CELLRANGER_VER.tar.gz /opt/cellranger-$CELLRANGER_VER.tar.gz COPY cellranger-$CELLRANGER_VER.tar.gz /opt/cellranger-$CELLRANGER_VER.tar.gz