diff --git a/.github/workflows/bwa_index.yml b/.github/workflows/bwa_index.yml
new file mode 100644
index 00000000..c15c35c9
--- /dev/null
+++ b/.github/workflows/bwa_index.yml
@@ -0,0 +1,30 @@
+name: bwa_index
+on:
+  push:
+    paths:
+      - software/bwa/index/**
+      - .github/workflows/bwa_index.yml
+      - tests
+  pull_request:
+    paths:
+      - software/bwa/index/**
+      - .github/workflows/bwa_index.yml
+      - tests
+
+jobs:
+  ci_test:
+    runs-on: ubuntu-latest
+    env:
+      NXF_ANSI_LOG: false
+    steps:
+
+    - uses: actions/checkout@v2
+
+    - name: Install Nextflow
+      run: |
+        export NXF_VER="20.07.1"
+        wget -qO- get.nextflow.io | bash
+        sudo mv nextflow /usr/local/bin/
+
+    # Test the module
+    - run: nextflow run ./software/bwa/index/test/ -profile docker
diff --git a/software/bwa/index/test/input/NC_010473.fa b/software/bwa/index/test/input/NC_010473.fa
new file mode 120000
index 00000000..d2298ff8
--- /dev/null
+++ b/software/bwa/index/test/input/NC_010473.fa
@@ -0,0 +1 @@
+../../../../../tests/data/fasta/E_coli/NC_010473.fa
\ No newline at end of file
diff --git a/software/bwa/index/test/output/bwa/NC_010473.fa.amb b/software/bwa/index/test/output/bwa/NC_010473.fa.amb
new file mode 100644
index 00000000..7355c4ea
--- /dev/null
+++ b/software/bwa/index/test/output/bwa/NC_010473.fa.amb
@@ -0,0 +1,3 @@
+4686137 1 2
+20895 1 Y
+142347 1 R
diff --git a/software/bwa/index/test/output/bwa/NC_010473.fa.ann b/software/bwa/index/test/output/bwa/NC_010473.fa.ann
new file mode 100644
index 00000000..ddfe94ec
--- /dev/null
+++ b/software/bwa/index/test/output/bwa/NC_010473.fa.ann
@@ -0,0 +1,3 @@
+4686137 1 11
+0 gi|170079663|ref|NC_010473.1| Escherichia coli str. K-12 substr. DH10B, complete genome
+0 4686137 2
diff --git a/software/bwa/index/test/output/bwa/NC_010473.fa.bwt b/software/bwa/index/test/output/bwa/NC_010473.fa.bwt
new file mode 100644
index 00000000..855b64ae
Binary files /dev/null and b/software/bwa/index/test/output/bwa/NC_010473.fa.bwt differ
diff --git a/software/bwa/index/test/output/bwa/NC_010473.fa.pac b/software/bwa/index/test/output/bwa/NC_010473.fa.pac
new file mode 100644
index 00000000..3aebd5a6
Binary files /dev/null and b/software/bwa/index/test/output/bwa/NC_010473.fa.pac differ
diff --git a/software/bwa/index/test/output/bwa/NC_010473.fa.sa b/software/bwa/index/test/output/bwa/NC_010473.fa.sa
new file mode 100644
index 00000000..3ad7129d
Binary files /dev/null and b/software/bwa/index/test/output/bwa/NC_010473.fa.sa differ