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Update picard version

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drpatelh 2020-10-12 15:58:09 +01:00
parent 74f27803b4
commit d19a8c702d
3 changed files with 9 additions and 9 deletions
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6
software/picard/collectmultiplemetrics/main.nf
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@ -8,10 +8,10 @@ process PICARD_COLLECTMULTIPLEMETRICS {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/picard:2.23.2--0" container "quay.io/biocontainers/picard:2.23.6--0"
//container "https://depot.galaxyproject.org/singularity/picard:2.23.2--0" //container "https://depot.galaxyproject.org/singularity/picard:2.23.6--0"
conda (params.conda ? "bioconda::picard=2.23.2" : null) conda (params.conda ? "bioconda::picard=2.23.6" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/picard/markduplicates/main.nf
View file

@ -8,10 +8,10 @@ process PICARD_MARKDUPLICATES {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/picard:2.23.2--0" container "quay.io/biocontainers/picard:2.23.6--0"
//container "https://depot.galaxyproject.org/singularity/picard:2.23.2--0" //container "https://depot.galaxyproject.org/singularity/picard:2.23.6--0"
conda (params.conda ? "bioconda::picard=2.23.2" : null) conda (params.conda ? "bioconda::picard=2.23.6" : null)
input: input:
tuple val(meta), path(bam) tuple val(meta), path(bam)

6
software/picard/mergesamfiles/main.nf
View file

@ -8,10 +8,10 @@ process PICARD_MERGESAMFILES {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) } saveAs: { filename -> saveFiles(filename:filename, options:options, publish_dir:getSoftwareName(task.process), publish_id:meta.id) }
container "quay.io/biocontainers/picard:2.23.2--0" container "quay.io/biocontainers/picard:2.23.6--0"
//container "https://depot.galaxyproject.org/singularity/picard:2.23.2--0" //container "https://depot.galaxyproject.org/singularity/picard:2.23.6--0"
conda (params.conda ? "bioconda::picard=2.23.2" : null) conda (params.conda ? "bioconda::picard=2.23.6" : null)
input: input:
tuple val(meta), path(bams) tuple val(meta), path(bams)