From d1f824ae66f432301bf1325ab8fa48825aa43bac Mon Sep 17 00:00:00 2001
From: Nicolas Vannieuwkerke <nicolas.vannieuwkerke@ugent.be>
Date: Fri, 13 May 2022 14:21:48 +0200
Subject: [PATCH] updated meta.yml

---
 modules/gatk4/splitintervals/main.nf  |  2 +-
 modules/gatk4/splitintervals/meta.yml | 12 ++++++++++++
 2 files changed, 13 insertions(+), 1 deletion(-)

diff --git a/modules/gatk4/splitintervals/main.nf b/modules/gatk4/splitintervals/main.nf
index d575191f..adb72dfb 100644
--- a/modules/gatk4/splitintervals/main.nf
+++ b/modules/gatk4/splitintervals/main.nf
@@ -11,7 +11,7 @@ process GATK4_SPLITINTERVALS {
     tuple val(meta), path(intervals)
     path(fasta)
     path(fasta_fai)
-    path(fasta_dict)
+    path(dict)
 
     output:
     tuple val(meta), path("**.interval_list"), emit: split_intervals
diff --git a/modules/gatk4/splitintervals/meta.yml b/modules/gatk4/splitintervals/meta.yml
index 6cf7cedc..ba557544 100644
--- a/modules/gatk4/splitintervals/meta.yml
+++ b/modules/gatk4/splitintervals/meta.yml
@@ -21,6 +21,18 @@ input:
       type: file
       description: Interval list or BED
       pattern: "*.{interval,interval_list,bed}"
+  - fasta:
+      type: file
+      description: Reference FASTA
+      pattern: "*.{fa,fasta}"
+  - fasta_fai:
+      type: file
+      description: Reference FASTA index
+      pattern: "*.fai"
+  - dict:
+      type: file
+      description: Reference sequence dictionary
+      pattern: "*.dict"
 
 output:
   - meta: