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update cnvpytor

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This commit is contained in:
Ramprasad Neethiraj 2022-05-01 21:14:01 +02:00
parent 76ac37c529
commit d2004a2b76
4 changed files with 12 additions and 12 deletions
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6
modules/cnvpytor/callcnvs/main.nf
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@ -2,10 +2,10 @@ process CNVPYTOR_CALLCNVS {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::cnvpytor=1.0" : null) conda (params.enable_conda ? "bioconda::cnvpytor=1.2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvpytor:1.0--py39h6a678da_2': 'https://depot.galaxyproject.org/singularity/cnvpytor:1.2.1--pyhdfd78af_0':
'quay.io/biocontainers/cnvpytor:1.0--py39h6a678da_2' }" 'quay.io/biocontainers/cnvpytor:1.2.1--pyhdfd78af_0' }"
input: input:
tuple val(meta), path(pytor) tuple val(meta), path(pytor)

6
modules/cnvpytor/histogram/main.nf
View file

@ -2,10 +2,10 @@ process CNVPYTOR_HISTOGRAM {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::cnvpytor=1.0" : null) conda (params.enable_conda ? "bioconda::cnvpytor=1.2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvpytor:1.0--py39h6a678da_2': 'https://depot.galaxyproject.org/singularity/cnvpytor:1.2.1--pyhdfd78af_0':
'quay.io/biocontainers/cnvpytor:1.0--py39h6a678da_2' }" 'quay.io/biocontainers/cnvpytor:1.2.1--pyhdfd78af_0' }"
input: input:
tuple val(meta), path(pytor) tuple val(meta), path(pytor)

6
modules/cnvpytor/importreaddepth/main.nf
View file

@ -2,10 +2,10 @@ process CNVPYTOR_IMPORTREADDEPTH {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::cnvpytor=1.0" : null) conda (params.enable_conda ? "bioconda::cnvpytor=1.2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvpytor:1.0--py39h6a678da_2': 'https://depot.galaxyproject.org/singularity/cnvpytor:1.2.1--pyhdfd78af_0':
'quay.io/biocontainers/cnvpytor:1.0--py39h6a678da_2' }" 'quay.io/biocontainers/cnvpytor:1.2.1--pyhdfd78af_0' }"
input: input:
tuple val(meta), path(input_file), path(index) tuple val(meta), path(input_file), path(index)

6
modules/cnvpytor/partition/main.nf
View file

@ -2,10 +2,10 @@ process CNVPYTOR_PARTITION {
tag "$meta.id" tag "$meta.id"
label 'process_medium' label 'process_medium'
conda (params.enable_conda ? "bioconda::cnvpytor=1.0" : null) conda (params.enable_conda ? "bioconda::cnvpytor=1.2.1" : null)
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/cnvpytor:1.0--py39h6a678da_2': 'https://depot.galaxyproject.org/singularity/cnvpytor:1.2.1--pyhdfd78af_0':
'quay.io/biocontainers/cnvpytor:1.0--py39h6a678da_2' }" 'quay.io/biocontainers/cnvpytor:1.2.1--pyhdfd78af_0' }"
input: input:
tuple val(meta), path(pytor) tuple val(meta), path(pytor)