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update tests

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This commit is contained in:
Matthias De Smet 2022-04-22 14:42:43 +02:00
parent d617a50371
commit d293cffc6a
1 changed files with 6 additions and 4 deletions
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10
tests/modules/bamtools/split/main.nf
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@ -2,15 +2,17 @@
nextflow.enable.dsl = 2 nextflow.enable.dsl = 2
include { BAMTOOLS_SPLIT } from '../../../../modules/bamtools/split/main.nf' include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_SINGLE } from '../../../../modules/bamtools/split/main.nf'
include { BAMTOOLS_SPLIT as BAMTOOLS_SPLIT_MULTIPLE } from '../../../../modules/bamtools/split/main.nf'
workflow test_bamtools_split_single_input { workflow test_bamtools_split_single_input {
input = [ input = [
[ id:'test', single_end:false ], // meta map [ id:'test', single_end:false ], // meta map
file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true) ] file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true)
]
BAMTOOLS_SPLIT ( input ) BAMTOOLS_SPLIT_SINGLE ( input )
} }
workflow test_bamtools_split_multiple_input { workflow test_bamtools_split_multiple_input {
@ -20,5 +22,5 @@ workflow test_bamtools_split_multiple_input {
[file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)] [file(params.test_data['homo_sapiens']['illumina']['test_paired_end_sorted_bam'], checkIfExists: true), file(params.test_data['homo_sapiens']['illumina']['test2_paired_end_sorted_bam'], checkIfExists: true)]
[ [
BAMTOOLS_SPLIT ( input ) BAMTOOLS_SPLIT_MULTIPLE ( input )
} }