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Update modules/rtgtools/vcfeval/main.nf

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Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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nvnieuwk 2022-05-10 13:26:14 +02:00 committed by GitHub
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commit d3927aae99
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1 changed files with 2 additions and 2 deletions
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modules/rtgtools/vcfeval/main.nf
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@ -33,8 +33,8 @@ process RTGTOOLS_VCFEVAL {
def prefix = task.ext.prefix ?: "${meta.id}" def prefix = task.ext.prefix ?: "${meta.id}"
def bed_regions = truth_regions ? "--bed-regions=$truth_regions" : "" def bed_regions = truth_regions ? "--bed-regions=$truth_regions" : ""
def eval_regions = evaluation_regions ? "--evaluation-regions=$evaluation_regions" : "" def eval_regions = evaluation_regions ? "--evaluation-regions=$evaluation_regions" : ""
def truth_index = truth_vcf_tbi ?: "rtg index $truth_vcf" def truth_index = truth_vcf_tbi ? "" : "rtg index $truth_vcf"
def query_index = query_vcf_tbi ?: "rtg index $query_vcf" def query_index = query_vcf_tbi ? "" : "rtg index $query_vcf"
""" """
$truth_index $truth_index