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This commit is contained in:
SusiJo 2022-05-31 14:45:23 +02:00
parent e083bfafa0
commit d484aa1906
1 changed files with 4 additions and 4 deletions
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8
tests/modules/gatk4/markduplicatesspark/test.yml
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@ -26,7 +26,7 @@
md5sum: 898cb0a6616897d8ada90bab53bf0837
- path: output/gatk4/test.metrics
contains:
"[ ## METRICS CLASS org.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics
LIBRARY UNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED SECONDARY_OR_SUPPLEMENTARY_RDS UNMAPPED_READS UNPAIRED_READ_DUPLICATES READ_PAIR_DUPLICATES READ_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION ESTIMATED_LIBRARY_SIZE
testN 0 2820 2 2 0 828 0 0.293617 3807
testT 0 2718 0 0 0 716 0 0.263429 4206 ]"
"## METRICS CLASS\torg.broadinstitute.hellbender.utils.read.markduplicates.GATKDuplicationMetrics
LIBRARY\tUNPAIRED_READS_EXAMINED READ_PAIRS_EXAMINED\tSECONDARY_OR_SUPPLEMENTARY_RDS\tUNMAPPED_READS\tUNPAIRED_READ_DUPLICATES\tREAD_PAIR_DUPLICATES\tREAD_PAIR_OPTICAL_DUPLICATESPERCENT_DUPLICATION\tESTIMATED_LIBRARY_SIZE
testN\t0\t2820\t2\t2\t0\t828\t0\t0.293617\t3807
testT\t0\t2718\t0\t0\t0\t716\t0\t0.263429\t4206"