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Pangolin bump new version (3.0.5) (#531)

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* Bump new pangolin version

* Update tests
This commit is contained in:
Jose Espinosa-Carrasco 2021-06-09 15:11:59 +02:00 committed by GitHub
parent 580d1e194a
commit d71c1b65eb
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2 changed files with 4 additions and 4 deletions
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6
software/pangolin/main.nf
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@ -11,11 +11,11 @@ process PANGOLIN {
mode: params.publish_dir_mode, mode: params.publish_dir_mode,
saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) } saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
conda (params.enable_conda ? 'bioconda::pangolin=2.4.2' : null) conda (params.enable_conda ? 'bioconda::pangolin=3.0.5' : null)
if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) { if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
container 'https://depot.galaxyproject.org/singularity/pangolin:2.4.2--pyhdfd78af_0' container 'https://depot.galaxyproject.org/singularity/pangolin:3.0.5--pyhdfd78af_0'
} else { } else {
container 'quay.io/biocontainers/pangolin:2.4.2--pyhdfd78af_0' container 'quay.io/biocontainers/pangolin:3.0.5--pyhdfd78af_0'
} }
input: input:

2
tests/software/pangolin/test.yml
View file

@ -4,4 +4,4 @@
- pangolin - pangolin
files: files:
- path: ./output/pangolin/test.pangolin.csv - path: ./output/pangolin/test.pangolin.csv
md5sum: 57f6e1df5caa2515b0f1cefedeed6770 md5sum: 02d916f18095694a7641ebc29fecaeae