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Deepbgc update versions.yml (#2058)

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* not working yet (db not found)

* modify deeparg/download module to return db-path

* 🪄

* Prettier

* add test.yml

* much prettier

* test.yml delete md5 for pot. empty files

* adapt test.yml

* test.yml again

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

* add deepbgc prodigal version to versions.yml

* Apply suggestions from code review

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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louperelo 2022-09-14 16:15:00 +02:00 committed by GitHub
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modules/deepbgc/pipeline/main.nf
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@ -42,6 +42,7 @@ process DEEPBGC_PIPELINE {
cat <<-END_VERSIONS > versions.yml cat <<-END_VERSIONS > versions.yml
"${task.process}": "${task.process}":
deepbgc: \$(echo \$(deepbgc info 2>&1 /dev/null/ | grep 'version' | cut -d " " -f3) ) deepbgc: \$(echo \$(deepbgc info 2>&1 /dev/null/ | grep 'version' | cut -d " " -f3) )
prodigal: \$(prodigal -v 2>&1 | sed -n 's/Prodigal V\\(.*\\):.*/\\1/p')
END_VERSIONS END_VERSIONS
""" """
} }